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    <title>Recent ucr_postprints items</title>
    <link>https://escholarship.org/uc/ucr_postprints/rss</link>
    <description>Recent eScholarship items from UC Riverside Previously Published Works</description>
    <pubDate>Thu, 18 Jun 2026 09:25:42 +0000</pubDate>
    <item>
      <title>The long reach of childhood income inequality: a multinational twin study of gene–environment interplay on adult depressive symptoms</title>
      <link>https://escholarship.org/uc/item/68c924z0</link>
      <description>BACKGROUND: Living in a country with a large gap between high and low earners has been linked to poor health, including depression. Less studied is gene-by-environment interplay with income inequality as the environmental exposure. Here, we examine the association between childhood exposure to inequality and individual differences in adult depressive symptoms, testing for moderation of genetic influences by inequality using polygenic indices for major depressive disorder, as well as twin models.
METHODS: The research participants were 69,924 members of twin studies from four developed countries, born between 1893 and 1979, aged 22-103 years at depressive symptom assessment. Genotyping was available for 6,256 participants. Income inequality was operationalized as share of income accruing to the top 1% for each country when the participants were between age 5 and 15 years.
RESULTS: Childhood income inequality was associated with depressive symptom scores in adulthood, adjusting...</description>
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      <pubDate>Wed, 17 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Petkus, Andrew J</name>
      </author>
      <author>
        <name>Reynolds, Chandra A</name>
        <uri>https://orcid.org/0000-0001-6502-7173</uri>
      </author>
      <author>
        <name>Finch, Brian K</name>
      </author>
      <author>
        <name>Thomas, Kyla</name>
      </author>
      <author>
        <name>Beam, Christopher R</name>
      </author>
      <author>
        <name>Catts, Vibeke S</name>
      </author>
      <author>
        <name>Ericsson, Malin</name>
      </author>
      <author>
        <name>Finkel, Deborah G</name>
      </author>
      <author>
        <name>Franz, Carol E</name>
        <uri>https://orcid.org/0000-0002-8987-1755</uri>
      </author>
      <author>
        <name>Kremen, William S</name>
      </author>
      <author>
        <name>Larsen, Lisbeth Aagaard</name>
      </author>
      <author>
        <name>Martin, Nicholas G</name>
      </author>
      <author>
        <name>McGue, Matt</name>
      </author>
      <author>
        <name>Mosing, Miriam A</name>
      </author>
      <author>
        <name>Neiderhiser, Jenae M</name>
      </author>
      <author>
        <name>Nygaard, Marianne</name>
      </author>
      <author>
        <name>Pedersen, Nancy L</name>
      </author>
      <author>
        <name>Thalamuthu, Anbupalam</name>
      </author>
      <author>
        <name>Whitfield, Keith E</name>
      </author>
      <author>
        <name>Gatz, Margaret</name>
      </author>
      <author>
        <name>Consortium, the IGEMS</name>
      </author>
    </item>
    <item>
      <title>Contributions of Gray Matter Microstructure to Differences in Fluid Cognition and Episodic Memory Across the Healthy Adult Lifespan</title>
      <link>https://escholarship.org/uc/item/9th8c22k</link>
      <description>Cognitive decline, in healthy older adults without cognitive impairment or dementia, has been associated with numerous microstructural alterations in brain tissue using magnetic resonance imaging (MRI). Prior studies have primarily linked age-related cognitive decline to alterations in white matter tissue, but methodological advances in diffusion-weighted imaging (dMRI) data acquisition and modeling now allow for these analyses to be extended to gray matter tissue. Here, using a sample of 152 healthy adults (18-88 years of age), we used a multicompartment dMRI model to assess (1) age-related differences in gray matter microstructure of functionally defined networks and (2) whether microstructural alterations accounted for age-related differences in episodic memory and speed-dependent fluid cognition. We observed significant age-related alterations in gray matter tissue in the form of nonlinear, age-related increases and decreases in intracellular and dispersed diffusion, respectively,...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Merenstein, Jenna L</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
      <author>
        <name>Madden, David J</name>
      </author>
    </item>
    <item>
      <title>The QuadMax Task: Parametrically Manipulating Associative Memory Load across the Adult Lifespan</title>
      <link>https://escholarship.org/uc/item/8f63b4kw</link>
      <description>Adults of all ages are worse at recognizing pairs of items that were previously seen together relative to the individual items, and this paired-associative memory deficit is exacerbated in aging. Less is known about memory for higher associative loads, which place greater demands on binding processes that link items into a cohesive memory trace, among other processes (e.g., working memory, recollection). In this study, adults across the lifespan (n&amp;nbsp;=&amp;nbsp;250, 18-78&amp;nbsp;years) completed a novel recognition task in which they studied word pairs, triplets, and quadruplets and were tested on their memory for repeated, recombined, and novel word sets. Associative memory deficits were seen in adults of all ages as fewer correct responses to repeated sets (hits), more incorrect responses to recombined sets (recombined false alarm, FA), and larger differences between these measures (associative memory) at higher set sizes. In addition, older adults had worse associative memory...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Franco, Corinna Y</name>
      </author>
      <author>
        <name>Alcaraz-Torres, Alexander</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>The QuadMax Task: A Novel Parametric Manipulation of Associative Memory Load in Adults Across the Lifespan</title>
      <link>https://escholarship.org/uc/item/7nd9f115</link>
      <description>&lt;p&gt;Adults of all ages are worse at remembering which pairs of items were previously seen together relative to memory for the individual items, and this paired-associative memory deficit is exacerbated in aging. Less is known about memory for higher-order associations, including whether they place greater demands on the binding processes that link information into a cohesive memory trace. In this study, adults across the lifespan (Experiment 1: n = 250, 18-78 years) and in extreme age groups (Experiment 2: n = 64, 18-25 and 64-78 years) completed a novel recognition task in which they studied word pairs, triplets, and quadruplets and were later tested on their memory for repeated, recombined, and novel word sets. Associative memory deficits were seen in both experiments as the difference between correct responses to repeated (hits) and incorrect responses to recombined (recombined false alarm, FA) sets that decreased from pairs to quadruplets. In addition, older age groups had...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/7nd9f115</guid>
      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Franco, Corinna</name>
      </author>
      <author>
        <name>Alcaraz-Torres, Alexander</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>Connectome-based predictive modeling of grip strength: a marker of physical frailty</title>
      <link>https://escholarship.org/uc/item/7hn5j4hf</link>
      <description>Introduction: Frailty is characterized by a persistent and progressive decline in functional capacity, leading to increased vulnerability to stressors and a heightened risk of adverse health outcomes, both physically and mentally. Despite frailty's prevalence in older adults, there is limited research on its neural substrates.
Methods: In this study, we used connectome-based predictive modeling (CPM) to find a linear relationship between task-based connectomes taken from tasks that involved similar handgrip manipulations and a separate measure of physical frailty: the maximum grip strength in older adults.
Results: We observed that the task-based connectomes were able to explain individual differences in grip strength, with the Subcortical and Cerebellum network, particularly the caudate nucleus functional connectivity, being the strongest predictor.
Discussion: These findings demonstrate that task-based functional connectomes can serve as personalized markers for predicting individual...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ghaffari, Amin</name>
      </author>
      <author>
        <name>Abouzaki, Majd</name>
      </author>
      <author>
        <name>Romero, Yasmine</name>
      </author>
      <author>
        <name>Sun, Andrew</name>
      </author>
      <author>
        <name>Seitz, Aaron</name>
        <uri>https://orcid.org/0000-0003-4936-9303</uri>
      </author>
      <author>
        <name>Langley, Jason</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
      <author>
        <name>Hu, Xiaoping</name>
      </author>
    </item>
    <item>
      <title>Examining iron‐related off‐target binding effects of 18F‐AV1451 PET in the cortex of Aβ+ individuals</title>
      <link>https://escholarship.org/uc/item/6bh2b8ms</link>
      <description>The presence of neurofibrillary tangles containing hyper-phosphorylated tau is a characteristic of Alzheimer's disease (AD) pathology. The positron emission tomography (PET) radioligand sensitive to tau neurofibrillary tangles (&lt;sup&gt;18&lt;/sup&gt;F-AV1451) also binds with iron. This off-target binding effect may be enhanced in older adults on the AD spectrum, particularly those with amyloid-positive biomarkers. Here, we examined group differences in &lt;sup&gt;18&lt;/sup&gt;F-AV1451 PET after controlling for iron-sensitive measures from magnetic resonance imaging (MRI) and its relationships to tissue microstructure and cognition in 40 amyloid beta positive (Aβ+) individuals, 20 amyloid beta negative (Aβ-) with MCI and 31 Aβ- control participants. After controlling for iron, increased &lt;sup&gt;18&lt;/sup&gt;F-AV1451 PET uptake was found in the temporal lobe and hippocampus of Aβ+ participants compared to Aβ- MCI and control participants. Within the Aβ+ group, significant correlations were seen between &lt;sup&gt;18&lt;/sup&gt;F-AV1451...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Langley, Jason</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
      <author>
        <name>Hu, Xiaoping P</name>
        <uri>https://orcid.org/0000-0002-8155-7040</uri>
      </author>
      <author>
        <name>Initiative, for the Alzheimer's Disease Neuroimaging</name>
      </author>
    </item>
    <item>
      <title>Locus Coeruleus Engagement Drives Network Connectivity Dynamics In Humans And Rats</title>
      <link>https://escholarship.org/uc/item/41t6h49z</link>
      <description>Locus Coeruleus Engagement Drives Network Connectivity Dynamics In Humans And Rats</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/41t6h49z</guid>
      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hussain, Sana</name>
      </author>
      <author>
        <name>Shalchy, Mahsa Alizadeh</name>
      </author>
      <author>
        <name>Yaghoubi, Kimia C</name>
      </author>
      <author>
        <name>Langley, Jason</name>
      </author>
      <author>
        <name>Chen, Xu</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
      <author>
        <name>Huang, Ringo</name>
      </author>
      <author>
        <name>Clewett, David</name>
      </author>
      <author>
        <name>Nielsen, Shawn E</name>
      </author>
      <author>
        <name>Velasco, Rico</name>
      </author>
      <author>
        <name>Kennedy, Briana</name>
      </author>
      <author>
        <name>Han, Sophia</name>
      </author>
      <author>
        <name>Tu, Kristie</name>
      </author>
      <author>
        <name>Seitz, Aaron R</name>
      </author>
      <author>
        <name>Zhang, Nanyin</name>
      </author>
      <author>
        <name>Mather, Mara</name>
      </author>
      <author>
        <name>Hu, Xiaoping</name>
      </author>
      <author>
        <name>Peters, Megan AK</name>
        <uri>https://orcid.org/0000-0002-0248-0816</uri>
      </author>
    </item>
    <item>
      <title>Neuroimaging Measures of Iron and Gliosis Explain Memory Performance in Aging</title>
      <link>https://escholarship.org/uc/item/3bv183c6</link>
      <description>Abstract  Evidence from animal and histological studies have indicated that accumulation of iron in the brain results in reactive gliosis that contributes to cognitive deficits. The current study extends these findings to human cognitive aging and suggests that magnetic resonance imaging (MRI) techniques like quantitative relaxometry can be used to study iron and its effects in vivo . The effects of iron on microstructure and memory performance were examined using a combination of quantitative relaxometry and multi-compartment diffusion imaging in 35 young (21.06 ± 2.18 years) and 28 older (72.58 ± 6.47 years) adults, who also completed a memory task. Replicating past work, results revealed age-related increases in iron content (R 2 *) and diffusion, and decreases in memory performance. Independent of age group, iron content was significantly related to restricted (intracellular) diffusion in regions with low-moderate iron (hippocampus, caudate) and to all diffusion metrics in...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Venkatesh, Anu</name>
      </author>
      <author>
        <name>Daugherty, Ana M</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>Aging of gray matter microstructure: A brain-wide characterization of, age group differences using NODDI</title>
      <link>https://escholarship.org/uc/item/2g16p0xp</link>
      <description>This study aimed to provide a complete characterization of age group differences in cortical lobar, hippocampal, and subcortical gray matter microstructure using a multi-compartment diffusion-weighted MRI (DWI) approach with parameters optimized for gray matter (Neurite Orientation Dispersion and Density Imaging, NODDI). 76 younger (undergraduate students) and 64 older (surrounding communities) adults underwent diffusion-, T1-, and susceptibility-weighted MRI. Results revealed eight unique patterns across the 12 regions of interest in the relative direction and magnitude of age effects across NODDI metrics, which were grouped into three prominent patterns: cortical gray matter had predominantly higher free diffusion in older than younger adults, the hippocampus and amygdala had predominantly higher dispersion of diffusion and intracellular diffusion in older than younger adults, and the putamen and globus pallidus had lower dispersion of diffusion in older than younger adults....</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2g16p0xp</guid>
      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Greenman, Danielle</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>Age group differences in learning-related activity reflect task stage, not learning stage</title>
      <link>https://escholarship.org/uc/item/1458p9sj</link>
      <description>&lt;p&gt;Healthy aging is accompanied by declines in the ability to learn associations between events, even when their relationship cannot be described. Previous functional magnetic resonance imaging (fMRI) studies have attributed these implicit associative learning (IAL) deficits to differential engagement of the hippocampus and basal ganglia in older relative to younger adults in early and late stages of the task, respectively. However, these task stages have been confounded with age group differences in learning performance that emerge later and to a lesser degree in older adults. To disentangle the effects of task stage from learning stage (i.e., when there is significant evidence of learning) on age group differences in the neural substrates of IAL, we acquired fMRI data while 28 younger (20.8 ± 2.3 years) and 22 older (73.6 ± 6.8 years) healthy adults completed the Triplets Learning Task, in which the location of two cues predicted the location of a target with high (HF) or low...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Merenstein, Jenna Louise</name>
      </author>
      <author>
        <name>Petok, Jessica R</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>Associations between iron and mean kurtosis in iron-rich grey matter nuclei in aging.</title>
      <link>https://escholarship.org/uc/item/1458d4j5</link>
      <description>OBJECTIVE: Elevated kurtosis values have been observed in subcortical grey matter structures of patients with neurodegenerative diseases. Here, we examined relationships between iron measures and kurtosis in iron-rich subcortical grey matter structures.Please check and confirm the affiliation 4 for the author "Xiaoping P. Hu".Affiliation 4 for Xiaoping P. Hu was incorrect since he is not associated with that department. We have removed this affiliation. Thanks!&amp;nbsp; MATERIALS AND METHODS: Multi-shell diffusion and multi-echo gradient echo acquisitions were used to derive mean kurtosis and iron measures (R&lt;sub&gt;2&lt;/sub&gt;* and magnetic susceptibility), respectively, in subcortical grey matter nuclei and white matter tracts in a discovery cohort (110 healthy older and 63 younger adults) and replication cohort (72 healthy older adults).Please confirm if the author names are presented accurately and in the correct sequence (Ilana J. Bennett and Xiaoping P. Hu). Also, kindly confirm the...</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Langley, Jason</name>
      </author>
      <author>
        <name>Solis, Kitzia</name>
      </author>
      <author>
        <name>Masjedizadeh, Vala</name>
      </author>
      <author>
        <name>Shao, Murphy</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
      <author>
        <name>Hu, Xiaoping P</name>
        <uri>https://orcid.org/0000-0002-8155-7040</uri>
      </author>
    </item>
    <item>
      <title>Handgrip strength relates to corticospinal tract microstructure in older adults</title>
      <link>https://escholarship.org/uc/item/0d2128zn</link>
      <description>Handgrip strength relates to corticospinal tract microstructure in older adults</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Solis, Kitzia</name>
      </author>
      <author>
        <name>Shao, Murphy</name>
      </author>
      <author>
        <name>Langley, Jason</name>
      </author>
      <author>
        <name>Seitz, Aaron R</name>
      </author>
      <author>
        <name>Hu, Xiaoping</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>Iron content affects age group differences in associative learning-related fMRI activity</title>
      <link>https://escholarship.org/uc/item/0bd5p26g</link>
      <description>Brain regions accumulate different amounts of iron with age, with older adults having higher iron in the basal ganglia (globus pallidus, putamen, caudate) relative to the hippocampus. This has important implications for functional magnetic resonance imaging (fMRI) studies in aging as the presence of iron may influence both neuronal functioning as well as the measured fMRI (BOLD) signal, and these effects will vary across age groups and brain regions. To test this hypothesis, the current study examined the effect of iron on age group differences in task-related activity within each basal nuclei and the hippocampus. Twenty-eight younger and 22 older adults completed an associative learning task during fMRI acquisition. Iron content (QSM, R&lt;sub&gt;2&lt;/sub&gt;*) was estimated from a multi-echo gradient echo sequence. As previously reported, older adults learned significantly less than younger adults and age group differences in iron content were largest in the basal ganglia (putamen, caudate)....</description>
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      <pubDate>Thu, 11 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Petok, Jessica R</name>
      </author>
      <author>
        <name>Merenstein, Jenna L</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
    </item>
    <item>
      <title>TGFβ signaling is required during human and chick Neural Crest formation</title>
      <link>https://escholarship.org/uc/item/8vx2b572</link>
      <description>Neural crest (NC) cells are multipotent cells unique to vertebrates that arise early in development, at the edge of the neural plate, and subsequently undergo an epithelial to mesenchymal transition, migrate throughout the body, and differentiate into many different derivatives, contributing to the formation of many organs and systems. NC induction research from multiple modeling organisms has identified critical roles for a few signaling pathways, including Wnt, BMP, FGF, Notch/ Delta, Indian Hedgehog, and Endothelin signaling (Prasad et al., 2019). Given the limitations of human embryo studies, pluripotent stem cell models of human NC formation have provided a resourceful alternative (Lee et al., 2007). Intriguingly, while TGFβ inhibition had not been identified as a signaling requirement for NC formation in any in vivo model organism, several pluripotent stem cell (PSC) models of human NC induction rely on TGFβ inhibition (Chambers et al., 2009). To address this issue, we evaluate...</description>
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      <pubDate>Sun, 7 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Gomez, Gustavo A</name>
      </author>
      <author>
        <name>Parmar, Bhaval</name>
      </author>
      <author>
        <name>Wong, Man</name>
      </author>
      <author>
        <name>Hernandez, Jacqueline C</name>
      </author>
      <author>
        <name>Guimarães-Andrade, Iris Paula</name>
      </author>
      <author>
        <name>Garcia-Castro, Martin I</name>
        <uri>https://orcid.org/0000-0001-5128-0004</uri>
      </author>
    </item>
    <item>
      <title>Author Correction: A roadmap for equitable reuse of public microbiome data</title>
      <link>https://escholarship.org/uc/item/9fn6w55v</link>
      <description>Correction to: Nature Microbiologyhttps://doi.org/10.1038/s41564-025-02116-2, published online 26 September 2025. In the version of this article initially published, in the first paragraph of the “Survey on data reuse” section, a note on participant consent, confidentiality and institutional review was missing and has now been inserted in the HTML and PDF versions of the article.</description>
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      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hug, Laura A</name>
      </author>
      <author>
        <name>Hatzenpichler, Roland</name>
      </author>
      <author>
        <name>Moraru, Cristina</name>
      </author>
      <author>
        <name>Soares, André R</name>
      </author>
      <author>
        <name>Meyer, Folker</name>
      </author>
      <author>
        <name>Heyder, Anke</name>
      </author>
      <author>
        <name>Probst, Alexander J</name>
      </author>
    </item>
    <item>
      <title>Multifocal Renal Infarction and Diabetic Ketoacidosis: Diagnostic Challenges and Anticoagulation Management in a Complex Case.</title>
      <link>https://escholarship.org/uc/item/98s5c7fn</link>
      <description>BACKGROUND Incidental findings of renal infarct secondary to thrombosis in acutely ill patients present a unique challenge in diagnosis. We present a case of idiopathic renal infarct to highlight its workup and management and encourage further investigation of renal infarctions. CASE REPORT A 68-year-old woman with a past medical history of diet-controlled diabetes, hypertension, and hyperlipidemia presented to the Emergency Department (ED) for abdominal pain. She was found to be in diabetic ketoacidosis with pyelonephritis, so she was admitted to the Intensive Care Unit (ICU) for insulin and dextrose drip. Due to her abdominal pain, she underwent computed tomography (CT) of her abdomen and pelvis with contrast. This revealed multifocal infarcts of her right kidney with noncalcified thrombus at the proximal right renal artery. Subsequent CT angiography confirmed a right renal artery thrombus. She was started on subcutaneous enoxaparin and downgraded to basic level of care. Her...</description>
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      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Miles, Levi</name>
      </author>
      <author>
        <name>Shin, Brandon</name>
      </author>
      <author>
        <name>Ji, Hyein</name>
      </author>
      <author>
        <name>Ghaffari-Rafi, Shadeh</name>
      </author>
      <author>
        <name>Chitsazan, Morteza</name>
      </author>
      <author>
        <name>Kim, Daniel</name>
      </author>
    </item>
    <item>
      <title>Structural Variants Selected during Yak Domestication Inferred from Long-Read Whole-Genome Sequencing.</title>
      <link>https://escholarship.org/uc/item/6d28g884</link>
      <description>Structural variants (SVs) represent an important genetic resource for both natural and artificial selection. Here we present a chromosome-scale reference genome for domestic yak (Bos grunniens) that has longer contigs and scaffolds (N50 44.72 and 114.39 Mb, respectively) than reported for any other ruminant genome. We further obtained long-read resequencing data for 6 wild and 23 domestic yaks and constructed a genetic SV map of 372,220 SVs that covers the geographic range of the yaks. The majority of the SVs contains repetitive sequences and several are in or near genes. By comparing SVs in domestic and wild yaks, we identified genes that are predominantly related to the nervous system, behavior, immunity, and reproduction and may have been targeted by artificial selection during yak domestication. These findings provide new insights in the domestication of animals living at high altitude and highlight the importance of SVs in animal domestication.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/6d28g884</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Liu, Wenyu</name>
      </author>
      <author>
        <name>Liu, Xinfeng</name>
      </author>
      <author>
        <name>Du, Xin</name>
      </author>
      <author>
        <name>Zhang, Ke</name>
      </author>
      <author>
        <name>Zhang, Yang</name>
      </author>
      <author>
        <name>Song, Yongwu</name>
      </author>
      <author>
        <name>Zi, Yunnan</name>
      </author>
      <author>
        <name>Qiu, Qiang</name>
      </author>
      <author>
        <name>Lenstra, Johannes</name>
      </author>
      <author>
        <name>Liu, Jianquan</name>
      </author>
    </item>
    <item>
      <title>Chemosis as an Initial Presentation of Systemic Lupus Erythematosus.</title>
      <link>https://escholarship.org/uc/item/5xx037vh</link>
      <description>Systemic lupus erythematosus (SLE) can present in a multitude of ways, which can be confounding and misleading for a clinician. Chemosis as an initial presentation is rare and has only been documented on a few case reports. However, when present, simultaneous involvement of other organs is likely. We present a previously healthy 29-year-old male who presented with severe bilateral chemosis and was subsequently diagnosed with SLE and antiphospholipid syndrome. Complications included multiple acute cerebral infarcts, lupus psychosis, lupus pleuritis, and lupus nephritis. The patient recovered well with appropriate treatment and chemosis ultimately resolved. Recognizing chemosis as an initial presentation of SLE is vital for appropriate evaluation and timely treatment to prevent disease progression.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/5xx037vh</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Luceno, Carvy</name>
      </author>
      <author>
        <name>Yu, Minho</name>
      </author>
      <author>
        <name>Kim, Daniel</name>
      </author>
      <author>
        <name>Sandhu, Vaneet</name>
      </author>
    </item>
    <item>
      <title>Sympatric speciation of the spiny mouse from Evolution Canyon in Israel substantiated genomically and methylomically.</title>
      <link>https://escholarship.org/uc/item/5906j3z8</link>
      <description>SignificanceWhether sympatric speciation (SS) is rare or common is still debated. Two populations of the spiny mouse, &lt;i&gt;Acomys cahirinus&lt;/i&gt;, from Evolution Canyon I (EC I) in Israel have been depicted earlier as speciating sympatrically by molecular markers and transcriptome. Here, we investigated SS both genomically and methylomically, demonstrating that the opposite populations of spiny mice are sister taxa and split from the common ancestor around 20,000 years ago without an allopatric history. Mate choice, olfactory receptors, and speciation genes contributed to prezygotic/postzygotic reproductive isolation. The two populations showed different methylation patterns, facilitating adaptation to their local environment. They cope with abiotic and biotic stresses, due to high solar interslope radiation differences. We conclude that our new genomic and methylomic data substantiated SS.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/5906j3z8</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Wang, Yinjia</name>
      </author>
      <author>
        <name>Qiao, Zhenglei</name>
      </author>
      <author>
        <name>Mao, Leyan</name>
      </author>
      <author>
        <name>Li, Fang</name>
      </author>
      <author>
        <name>Liang, Xiaolong</name>
      </author>
      <author>
        <name>An, Xuan</name>
      </author>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Liu, Xi</name>
      </author>
      <author>
        <name>Kuang, Zhuoran</name>
      </author>
      <author>
        <name>Wan, Na</name>
      </author>
      <author>
        <name>Nevo, Eviatar</name>
      </author>
      <author>
        <name>Li, Kexin</name>
      </author>
    </item>
    <item>
      <title>Which factors contribute most to genome size variation within angiosperms?</title>
      <link>https://escholarship.org/uc/item/3jf13322</link>
      <description>Genome size varies greatly across the flowering plants and has played an important role in shaping their evolution. It has been reported that many factors correlate with the variation in genome size, but few studies have systematically explored this at the genomic level. Here, we scan genomic information for 74 species from 74 families in 38 orders covering the major groups of angiosperms (the taxonomic information was acquired from the latest Angiosperm Phylogeny Group (APG IV) system) to evaluate the correlation between genome size variation and different genome characteristics: polyploidization, different types of repeat sequence content, and the dynamics of long terminal repeat retrotransposons (LTRs). Surprisingly, we found that polyploidization shows no significant correlation with genome size, while LTR content demonstrates a significantly positive correlation. This may be due to genome instability after polyploidization, and since LTRs occupy most of the genome content,...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3jf13322</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Wang, Dandan</name>
      </author>
      <author>
        <name>Zheng, Zeyu</name>
      </author>
      <author>
        <name>Li, Ying</name>
      </author>
      <author>
        <name>Hu, Hongyin</name>
      </author>
      <author>
        <name>Wang, Zhenyue</name>
      </author>
      <author>
        <name>Du, Xin</name>
      </author>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Zhu, Mingjia</name>
      </author>
      <author>
        <name>Dong, Longwei</name>
      </author>
      <author>
        <name>Ren, Guangpeng</name>
      </author>
      <author>
        <name>Yang, Yongzhi</name>
      </author>
    </item>
    <item>
      <title>Genomic divergence between two sister &lt;i&gt;Ostrya&lt;/i&gt; species through linked selection and recombination.</title>
      <link>https://escholarship.org/uc/item/3bv9r04c</link>
      <description>Studying the evolution of genomic divergence between lineages is a topical issue in evolutionary biology. However, the evolutionary forces that shape the heterogeneous divergence of the genomic landscape are still poorly understood. Here, two wind-pollinated sister-species (&lt;i&gt;Ostrya japonica&lt;/i&gt; and &lt;i&gt;O. chinensis&lt;/i&gt;) are used to explore what these potential forces might be. A total of 40 individuals from 16 populations across their main distribution areas in China were sampled for genome-wide resequencing. Population demography analyses revealed that these two sister-species diverged at 3.06-4.43 Mya. Both population contraction and increased gene flow were detected during glacial periods, suggesting secondary contact at those times. All three parameters (&lt;i&gt;D&lt;/i&gt; &lt;sub&gt;XY&lt;/sub&gt;, π, and &lt;i&gt;ρ&lt;/i&gt;) decreased in those regions showing high levels of differentiation (&lt;i&gt;F&lt;/i&gt; &lt;sub&gt;ST&lt;/sub&gt;). These findings indicate that linked selection and recombination played a key role in the...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3bv9r04c</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Zhang, Jin</name>
      </author>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Zheng, Zeyu</name>
      </author>
      <author>
        <name>Lu, Zhiqiang</name>
      </author>
      <author>
        <name>Yang, Yongzhi</name>
      </author>
    </item>
    <item>
      <title>Genomic insights into zokors phylogeny and speciation in China.</title>
      <link>https://escholarship.org/uc/item/32v6h091</link>
      <description>The phylogeny and speciation of subterranean zokors in China are unclear, as previous studies on morphology and limited molecular markers have generated conflicting results. This study unraveled the complex evolutionary history of eight zokor species in China based on de novo assembly at chromosome level and whole-genome sequencing of 23 populations. We found extensive phylogenetic discordances between nuclear and mitochondrial phylogenies, and different coalescent phylogenies, which could be explained by introgression and incomplete lineage sorting (ILS). The recent Qinghai-Tibet Plateau uplift (∼3.60 million y ago; Mya) drove Eospalax to speciate into clade A and clade B (∼3.22 Mya), and discordant phylogenies in this node were mainly attributed to introgression rather than ILS. Clade A rapidly diverged into three lineages due to geographical isolation and glaciation, while glaciation and C4 plant expansion contributed to the speciation of clade B. ILS contributed to the discordances...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/32v6h091</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Liu, Xi</name>
      </author>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Cai, Zhenyuan</name>
      </author>
      <author>
        <name>Kuang, Zhuoran</name>
      </author>
      <author>
        <name>Wan, Na</name>
      </author>
      <author>
        <name>Wang, Yinjia</name>
      </author>
      <author>
        <name>Mao, Leyan</name>
      </author>
      <author>
        <name>An, Xuan</name>
      </author>
      <author>
        <name>Li, Fang</name>
      </author>
      <author>
        <name>Feng, Tuo</name>
      </author>
      <author>
        <name>Liang, Xiaolong</name>
      </author>
      <author>
        <name>Qiao, Zhenglei</name>
      </author>
      <author>
        <name>Nevo, Eviatar</name>
      </author>
      <author>
        <name>Li, Kexin</name>
      </author>
    </item>
    <item>
      <title>Competing adaptations maintain nonadaptive variation in a wild cricket population.</title>
      <link>https://escholarship.org/uc/item/1fg008kv</link>
      <description>How emerging adaptive variants interact is an important factor in the evolution of wild populations, but the opportunity to empirically study this interaction is rare. We recently documented the emergence of an adaptive phenotype curly-wing in Hawaiian populations of field crickets (&lt;i&gt;Teleogryllus oceanicus&lt;/i&gt;). Curly-wing inhibits males ability to sing, protecting them from eavesdropping parasitoid flies (&lt;i&gt;Ormia ochracea&lt;/i&gt;). Surprisingly, curly-wing co-occurs with similarly protective silent flatwing phenotypes in multiple populations, in which neither phenotype has spread to fixation. These two phenotypes are frequently coexpressed, but since either sufficiently reduces song amplitude to evade the fly, their coexpression confers no additional fitness benefit. Numerous off-target phenotypic changes are known to accompany flatwing, and we find that curly-wing, too, negatively impacts male courtship ability and affects mass and survival of females under lab conditions. We...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/1fg008kv</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Rayner, Jack</name>
      </author>
      <author>
        <name>Eichenberger, Franca</name>
      </author>
      <author>
        <name>Bainbridge, Jessica</name>
      </author>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Zhang, Xiao</name>
      </author>
      <author>
        <name>Yusuf, Leeban</name>
      </author>
      <author>
        <name>Balenger, Susan</name>
      </author>
      <author>
        <name>Gaggiotti, Oscar</name>
      </author>
      <author>
        <name>Bailey, Nathan</name>
      </author>
    </item>
    <item>
      <title>The complete chloroplast genome sequence of &lt;i&gt;Opuntia sulphurea&lt;/i&gt; (Cactaceae).</title>
      <link>https://escholarship.org/uc/item/155494nn</link>
      <description>&lt;i&gt;Opuntia sulphurea&lt;/i&gt; Gillies ex Salm-Dyck 1834 (Cactaceae) acts as an invasive species due to its ability to survive in various environments. In this study, we assembled the complete chloroplast (cp) genome of &lt;i&gt;Opuntia sulphurea&lt;/i&gt;, which was 122,740 bp in length. The genome contained 100 genes, including 65 protein-coding genes, 31 tRNA genes and four rRNA genes. The base composition of the chloroplast genome was 32.11% A, 17.74% G, 18.34% C, and 31.80% T, resulting in an overall G + C content of 35.39%. A phylogenetic analysis across 23 species in Caryophyllales demonstrated a close relationship between &lt;i&gt;Opuntia sulphurea&lt;/i&gt; and &lt;i&gt;Opuntia quimilo&lt;/i&gt;.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/155494nn</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chen, Jinyuan</name>
      </author>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Tang, Weidong</name>
      </author>
      <author>
        <name>Du, Xin</name>
      </author>
      <author>
        <name>Yuan, Yang</name>
      </author>
      <author>
        <name>Wu, Shengdan</name>
      </author>
    </item>
    <item>
      <title>A High-Quality Reference Genome and Comparative Genomics of the Widely Farmed Banded Cricket (&lt;i&gt;Gryllodes sigillatus&lt;/i&gt;) Identifies Selective Breeding Targets.</title>
      <link>https://escholarship.org/uc/item/0zt3r3tv</link>
      <description>Farmed insects have gained attention as an alternative, sustainable source of protein with a lower carbon footprint than traditional livestock. We present a high-quality reference genome for one of the most commonly farmed insects, the banded cricket &lt;i&gt;Gryllodes sigillatus&lt;/i&gt;. In addition to its agricultural importance, &lt;i&gt;G. sigillatus&lt;/i&gt; is also a model in behavioural and evolutionary ecology research on reproduction and mating systems. We report comparative genomic analyses that clarify the banded crickets evolutionary history, identify gene family expansions and contractions unique to this lineage, associate these with agriculturally important traits, and identify targets for genome-assisted breeding efforts. The high-quality &lt;i&gt;G. sigillatus&lt;/i&gt; genome assembly plus accompanying comparative genomic analyses serve as foundational resources for both applied and basic research on insect farming and behavioural biology, enabling researchers to pinpoint trait-associated genetic...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0zt3r3tv</guid>
      <pubDate>Fri, 5 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Zhang, Shangzhe</name>
      </author>
      <author>
        <name>Duffield, Kristin</name>
      </author>
      <author>
        <name>Foquet, Bert</name>
      </author>
      <author>
        <name>Ramirez, Jose</name>
      </author>
      <author>
        <name>Sadd, Ben</name>
      </author>
      <author>
        <name>Sakaluk, Scott</name>
      </author>
      <author>
        <name>Hunt, John</name>
      </author>
      <author>
        <name>Bailey, Nathan</name>
      </author>
    </item>
    <item>
      <title>Aeschynomene americana induces terminal bacteroid differentiation in Bradyrhizobium sp. USDA3516, a novel model for dalbergioid-rhizobium symbiosis.</title>
      <link>https://escholarship.org/uc/item/94j1c2t0</link>
      <description>&lt;h4&gt;Background&lt;/h4&gt;The paradigms of legume-rhizobium symbiosis are derived primarily from conserved features of Inverted-Repeat Lacking Clade (IRLC) legumes and closely related species. The Dalbergioids diverged from the IRLC early in legume evolution and possess unique symbiotic features but few genetically tractable models. The small, diploid dalbergioid Aeschynomene americana (American jointvetch) has promise as a genetic model for Dalbergioid-rhizobia symbiosis, yet only a few studies have examined its symbiotic properties.&lt;h4&gt;Results&lt;/h4&gt;We examined the symbiont range of A. americana from central Florida and characterized a native A. americana nodule isolate, Bradyrhizobium sp. USDA3516. We find that A. americana forms effective symbioses with Bradyrhizobium sp. USDA3516, which is closely related to Thai A. americana symbiont Bradyrhizobium sp DOA9, and with symbionts from the dalbergioids stylo and peanut. Interestingly, several strains that effectively nodulated A. americana...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/94j1c2t0</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Carlew, T Scott</name>
      </author>
      <author>
        <name>Atherton Puri, Annika P</name>
      </author>
      <author>
        <name>Shim, Ashley</name>
      </author>
      <author>
        <name>Rojas, Camilo Parada</name>
      </author>
      <author>
        <name>Buchanan, Riley A</name>
      </author>
      <author>
        <name>Chang, Jeff H</name>
        <uri>https://orcid.org/0000-0002-1833-0695</uri>
      </author>
      <author>
        <name>Sachs, Joel L</name>
        <uri>https://orcid.org/0000-0002-0221-9247</uri>
      </author>
      <author>
        <name>Belin, Brittany J</name>
        <uri>https://orcid.org/0000-0002-1837-3214</uri>
      </author>
    </item>
    <item>
      <title>Decoding the origins of cellular self-organization for engineered biology</title>
      <link>https://escholarship.org/uc/item/8xg946qf</link>
      <description>Decoding the origins of cellular self-organization for engineered biology</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/8xg946qf</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chen, Qi</name>
        <uri>https://orcid.org/0000-0001-6353-9589</uri>
      </author>
      <author>
        <name>Zernicka-Goetz, Magdalena</name>
        <uri>https://orcid.org/0000-0002-7004-2471</uri>
      </author>
    </item>
    <item>
      <title>Visual Impairment and the Incidence of Concussions Among Youth Football Athletes</title>
      <link>https://escholarship.org/uc/item/8s421125</link>
      <description>&lt;h4&gt;Background&lt;/h4&gt;Concussions are a prevalent concern in contact sports, particularly among youth American football players. While extensive research has examined concussion mechanics, the relationship between visual impairment and concussion risk remains understudied.&lt;h4&gt;Purpose&lt;/h4&gt;To investigate the incidence of concussions among visually impaired versus non-visually impaired youth football players to inform clinical practice and preventive measures.&lt;h4&gt;Study design&lt;/h4&gt;Cohort study; Level of evidence, 3.&lt;h4&gt;Methods&lt;/h4&gt;A retrospective cohort study was performed using the TriNetX US Collaborative Network. Pediatric athletes aged 5 to 17 years with documented football participation were identified using International Classification of Diseases, Tenth Revision, codes. Visual impairment (H46-H47, H52-H54) was required to precede the index football encounter by ≥1 month. Concussions (S06.0) and concussion with loss of consciousness (LOC) (S06.0X1-S06.0X9) were assessed within...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/8s421125</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Jamaleddine, Karim</name>
      </author>
      <author>
        <name>Gad El Sayed, Marina</name>
      </author>
      <author>
        <name>Novak, Daniel</name>
        <uri>https://orcid.org/0000-0001-8559-3244</uri>
      </author>
      <author>
        <name>Goodman, Aubree</name>
      </author>
      <author>
        <name>Helms, Jackson</name>
      </author>
      <author>
        <name>Schlechter, John</name>
      </author>
    </item>
    <item>
      <title>Analysis of ladder fuel ignition through experiments and fire dynamics simulator simulation</title>
      <link>https://escholarship.org/uc/item/6nt1f3k7</link>
      <description>Analysis of ladder fuel ignition through experiments and fire dynamics simulator simulation</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/6nt1f3k7</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>He, Yucheng</name>
      </author>
      <author>
        <name>Nishandar, Sanika R</name>
      </author>
      <author>
        <name>Zhang, Jiachen</name>
      </author>
      <author>
        <name>Lee, Hannah</name>
      </author>
      <author>
        <name>Chong, Joey</name>
      </author>
      <author>
        <name>Burke, Gloria M</name>
      </author>
      <author>
        <name>Princevac, Marko</name>
        <uri>https://orcid.org/0000-0002-3512-7760</uri>
      </author>
      <author>
        <name>Weise, David R</name>
      </author>
    </item>
    <item>
      <title>The Transition and Spread of a Chaparral Crown Fire: Insights from Laboratory Scale Wind Tunnel Experiments</title>
      <link>https://escholarship.org/uc/item/6006r1bv</link>
      <description>Fire occurring in the chaparral behaves as a crown fire, a dual-layer fire that typically ignites in a dead surface fuel layer and transitions to an elevated live crown layer where it continues to spread. In chaparral fuels including chamise, a dominant species in southern California, flame transition to live crown fuels is associated with higher spread rates and greater fire intensity. Despite the relative importance of surface-to-crown transition and crown fire spread, most fire models represent chaparral fire as surface fire, therefore omitting key behavior processes driving this fire system. The purpose of this study was to characterize transition and spread behavior in chaparral fires modeled experimentally as crown fires. We examined heat release rate in the surface and crown fuel layers, time to transition, flame height, and rate of spread in wind-driven and nonwind-driven fires at two crown base heights. Our results showed that wind increased heat release rate, rate of...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/6006r1bv</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Cobian-Iñiguez, Jeanette</name>
      </author>
      <author>
        <name>Aminfar, Amir Hessam</name>
      </author>
      <author>
        <name>Saha, Shusmita</name>
      </author>
      <author>
        <name>Awayan, Kyle</name>
      </author>
      <author>
        <name>Weise, David R</name>
      </author>
      <author>
        <name>Princevac, Marko</name>
        <uri>https://orcid.org/0000-0002-3512-7760</uri>
      </author>
    </item>
    <item>
      <title>On the Use of Semi-empirical Flame Models for Spreading Chaparral Crown Fire</title>
      <link>https://escholarship.org/uc/item/48c9z725</link>
      <description>Flame geometry plays a key role in shaping fire behavior as it can influence flame spread, radiative heat transfer and fire intensity. For wildland fire, thorough characterizations of flame geometry can help advance the derivation of comprehensive models of wildfire behavior. Within the fire community, a classical flame modeling approach has been to develop semi-empirical models. Many of these models have been derived for surface fuels or for pool fire configurations. However, few have sought to model flame behavior in chaparral crown fires. Thus, the objective of this study is to assess the applicability of semi-empirical models on observed chaparral crown fire behavior. Semi-empirical models of flame tilt, flame height, and flame length from the literature are considered. Comparison with experimental observation of flame height in the crown fuel layer, showed good agreement between the 2/5th power law that relates flame height to heat release rate. Two new power-law correlations...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/48c9z725</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Cobian-Iñiguez, Jeanette</name>
      </author>
      <author>
        <name>Aminfar, AmirHessam</name>
      </author>
      <author>
        <name>Weise, David R</name>
      </author>
      <author>
        <name>Princevac, Marko</name>
      </author>
    </item>
    <item>
      <title>The exploitation of mutualisms</title>
      <link>https://escholarship.org/uc/item/3n44633x</link>
      <description>The exploitation of mutualisms</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3n44633x</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Sachs, Joel L</name>
        <uri>https://orcid.org/0000-0002-0221-9247</uri>
      </author>
    </item>
    <item>
      <title>Screening for Toxic Stress Response and Buffering Factors: A Case-Based, Trauma-Informed Approach to Health Equity</title>
      <link>https://escholarship.org/uc/item/1sv615pc</link>
      <description>Introduction: Exposure to adverse childhood experiences (ACEs) can lead to a toxic stress response with impacts on health that affect health equity. As part of our Health Equity, Social Justice, and Anti-racism curriculum, our aim was to introduce second-year medical students to a case-based method using a template-based screening and application of toxic stress, buffering factors, and resiliency-fostering tools to address health disparities and inequities with a trauma-informed care approach.
Methods: We developed an asynchronous e-learning module that demonstrated the impact of ACEs by introducing students to screening for toxic stress response and buffering factors on health, their role as health equity determinants, and the use of brief in-clinic resilience-fostering tools in patient care. This was followed by a synchronous, facilitated, small-group, virtual discussion of a clinical case. Pre- and postworkshop surveys assessed changes in knowledge, skills, and attitudes. A...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/1sv615pc</guid>
      <pubDate>Thu, 4 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Osei, Adwoa</name>
        <uri>https://orcid.org/0000-0003-4548-1381</uri>
      </author>
      <author>
        <name>Paz, Camila Garcia</name>
      </author>
      <author>
        <name>Stuparich, Mallory</name>
      </author>
      <author>
        <name>Racataian-Gavan, Rebeca</name>
      </author>
      <author>
        <name>Nelms, Laurel</name>
      </author>
      <author>
        <name>Suliman, Yasmine</name>
      </author>
      <author>
        <name>Smith, Amanda</name>
      </author>
      <author>
        <name>Bajwa, Moazzum</name>
      </author>
    </item>
    <item>
      <title>Advancing Understanding of Racial and Ethnic Disparities in Folic Acid Supplementation via National Institutes of Health All of Us Data</title>
      <link>https://escholarship.org/uc/item/3844m9kj</link>
      <description>&lt;h4&gt;Objective&lt;/h4&gt;Neural tube defects (NTDs) are congenital anomalies caused by failure of neural tube closure during pregnancy and contribute to childhood morbidity and mortality. Folic acid supplementation reduces NTDs risk, yet adherence remains low, particularly among Hispanic women and non-Hispanic Black women. This study examines folic acid supplementation by race/ethnicity, nativity, and social determinants of health (SDOH).&lt;h4&gt;Methods&lt;/h4&gt;Data came from the National Institutes of Health All of Us Research Program (Registered Tier Dataset v7), a large, diverse biomedical dataset that includes underrepresented populations. Analyses were restricted to participants enrolled between May 2018-June 2022. Adjusted multivariable logistic regression models assessed for differences in folic acid supplementation, controlling for age, income, education, insurance, and pregnancy.&lt;h4&gt;Results&lt;/h4&gt;Among pregnant and non-pregnant women of childbearing age (18-49&amp;nbsp;years; N&amp;nbsp;=&amp;nbsp;85,874),...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3844m9kj</guid>
      <pubDate>Wed, 3 Jun 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Almeida, Isabel F</name>
      </author>
      <author>
        <name>Marks, Yael</name>
      </author>
      <author>
        <name>Vu, Brian</name>
      </author>
      <author>
        <name>Mostafazadeh, Tara</name>
      </author>
    </item>
    <item>
      <title>Effects of environmental setting and diet on the gut microbial ecology of eastern hellbenders (Cryptobranchus alleganiensis alleganiensis)</title>
      <link>https://escholarship.org/uc/item/5nk3p96w</link>
      <description>BackgroundEastern hellbenders (Cryptobranchus alleganiensis alleganiensis) have undergone substantial population declines throughout their range, leading them to become the focus of increased conservation efforts, including care in zoo and university settings. However, effective implementation of such conservation strategies often relies on a comprehensive understanding of host health, which can be directly influenced by the gut microbiome, yet characterization of gut microbiota often remains overlooked in ex situ conservation facilities. Additionally, effects on the gut microbiome associated with releasing zoo-reared animals into the wild are poorly understood. Therefore, these circumstances make hellbenders an ideal species to examine the relationship between zoo management strategies and gut microbial dynamics.Methods16S rRNA sequencing was used to investigate dissimilarities between the gut microbiome of hellbenders in zoo and wild settings and to evaluate the impact of implementing...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/5nk3p96w</guid>
      <pubDate>Mon, 25 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Cummins, Chloe</name>
      </author>
      <author>
        <name>Sutton, William</name>
      </author>
      <author>
        <name>McLeod, Taina</name>
      </author>
      <author>
        <name>Dallas, Jason W</name>
      </author>
      <author>
        <name>Ghotbi, Mitra</name>
      </author>
      <author>
        <name>Vargas-Gastélum, Lluvia</name>
      </author>
      <author>
        <name>Alexander, N Reed</name>
      </author>
      <author>
        <name>Rurik, Alexander J</name>
      </author>
      <author>
        <name>McGinnity, Dale</name>
      </author>
      <author>
        <name>Reinsch, Sherri Doro</name>
      </author>
      <author>
        <name>Sandonato, Pia</name>
      </author>
      <author>
        <name>Arbour, Jessica</name>
      </author>
      <author>
        <name>Freake, Michael</name>
      </author>
      <author>
        <name>Ashley, Anthony</name>
      </author>
      <author>
        <name>Ternes, William</name>
      </author>
      <author>
        <name>Culp, Elizabeth</name>
      </author>
      <author>
        <name>Spatafora, Joseph</name>
      </author>
      <author>
        <name>McPhail, Kerry</name>
      </author>
      <author>
        <name>Stajich, Jason E</name>
        <uri>https://orcid.org/0000-0002-7591-0020</uri>
      </author>
      <author>
        <name>Hardman, Rebecca</name>
      </author>
      <author>
        <name>Walker, Donald M</name>
      </author>
    </item>
    <item>
      <title>Ultrasensitive, low-input detection of avocado sunblotch viroid via RPA-CRISPR and nanopore-array single-bead fluorescence readout.</title>
      <link>https://escholarship.org/uc/item/2914f069</link>
      <description>Rapid and sensitive detection of plant pathogens, such as the Avocado Sunblotch Viroid (ASBVd), is essential for early disease management and agricultural biosecurity. Yet, most current diagnostic methods not only require relatively large sample inputs but also often lack the ultrasensitivity required for reliable detection with scarce or minimally collected plant material. Here, we report a novel low-input but ultrasensitive diagnostic platform that integrates isothermal recombinase polymerase amplification (RPA), CRISPR-Cas12a detection, and a solid-state nanopore array for the detection of ASBVd. The system leverages CRISPR-Cas12a collateral cleavage activity to generate single-bead fluorescent signals, which are captured by a nanopore array through pressure-driven blockage. Our platform achieves a detection limit down to 1.68 copies/μL while using only 40 nL of bead-fluorophore mixture per readout, which is over 100-fold less than conventional assays based on fluorescent readout...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2914f069</guid>
      <pubDate>Mon, 25 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Xu, Jiayi</name>
      </author>
      <author>
        <name>Jiang, Xiaoqian</name>
      </author>
      <author>
        <name>Dashtarzhaneh, Mehdi</name>
      </author>
      <author>
        <name>Zhong, Yiding</name>
      </author>
      <author>
        <name>Sharma, Bhaskar</name>
      </author>
      <author>
        <name>Peng, Ruonan</name>
      </author>
      <author>
        <name>Zheng, Liangwei</name>
      </author>
      <author>
        <name>Khodadadi, Fatemeh</name>
      </author>
      <author>
        <name>Du, Ke</name>
      </author>
      <author>
        <name>Duan, Chuanhua</name>
      </author>
    </item>
    <item>
      <title>Examining the determinants of opposition to birthright citizenship</title>
      <link>https://escholarship.org/uc/item/09h096mp</link>
      <description>Since the end of racial prerequisite cases in 1952, anyone born on US soil has been granted birthright citizenship. But, prominent political figures have recently questioned whether children born to undocumented immigrants should automatically receive citizenship. Despite the importance of this issue, there is limited research on public attitudes towards this policy, its determinants, and its consequences. We address these open questions using the 2020 CMPS, and find that while most support birthright citizenship, a significant minority favors its revocation. Support for a ban is higher among Whites than among minorities. Those with closer ties to the immigrant experience, more liberal attitudes, and lower Trump favorability are less likely to support a ban. Negative attitudes towards undocumented immigrants and racial attitudes are also strongly correlated with banning birthright citizenship. Finally, birthright citizenship attitudes are consequential: across each racial group,...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/09h096mp</guid>
      <pubDate>Sun, 24 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Lajevardi, Nazita</name>
      </author>
      <author>
        <name>Merolla, Jennifer L</name>
        <uri>https://orcid.org/0000-0001-8257-7206</uri>
      </author>
    </item>
    <item>
      <title>Sound signature as paradigm: ecology, apparatus, and electroacoustic creation</title>
      <link>https://escholarship.org/uc/item/12h203jd</link>
      <description>Este artigo propõe o conceito de assinatura sonora como um paradigma para repensar a composição eletroacústica contemporânea na interseção entre ecologia, &amp;nbsp;filosofia e mediação tecnológica. Indo além do paradigma inicial do estúdio, centrado no objeto sonoro autônomo, o estudo argumenta que as práticas atuais – caracterizadas por eletrônica em tempo real, espacialização imersiva, integração audiovisual e sistemas orientados por inteligência artificial – privilegiam a organização relacional em vez de materiais sonoros isolados. A partir da teoria das paisagens sonoras ecológicas de Bernie Krause e do conceito de assinatura de Giorgio Agamben como operador paradigmático, o artigo reconceitua a composição como a construção e a revelação de campos sonoros relacionais. As assinaturas sonoras ecológicas emergem da distribuição dinâmica de nichos acústicos em sistemas vivos; de modo análogo, obras eletroacústicas geram ambientes estruturados nos quais a agência é distribuída entre...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/12h203jd</guid>
      <pubDate>Sat, 23 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chagas, Paulo C</name>
        <uri>https://orcid.org/0000-0003-1706-5508</uri>
      </author>
    </item>
    <item>
      <title>Kinetic and spectroscopic characterization of tungsten-substituted DMSO reductase from Rhodobacter sphaeroides</title>
      <link>https://escholarship.org/uc/item/9rf1m61n</link>
      <description>We have examined the kinetic and spectroscopic properties of a tungsten-substituted form of DMSO reductase from Rhodobacter sphaeroides, an enzyme that normally possesses molybdenum. Partial reduction with sodium dithionite yields a well-resolved W(V) EPR signal of the so-called “high-g split” type that exhibits markedly greater g-anisotropy than the corresponding Mo(V) signal of the native form of the enzyme, with the g&amp;nbsp;values shifted to higher magnetic field by as much as Δgave&amp;nbsp;=&amp;nbsp;0.056. Deuteration of the enzyme confirms that the coupled proton is solvent-exchangeable, allowing us to accurately simulate the tungsten hyperfine coupling. Global curve-fitting analysis of UV/vis absorption spectra observed in the course of the reaction of the tungsten-substituted enzyme with sodium dithionite affords a well-defined absorption spectrum for the W(V) species. Surprisingly, the absorption spectrum for this species exhibits significantly larger molar extinction coefficients...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/9rf1m61n</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Pacheco, Josué</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
    </item>
    <item>
      <title>Redox Characterization of the Complex Molybdenum Enzyme Formate Dehydrogenase from Cupriavidus necator</title>
      <link>https://escholarship.org/uc/item/9fc8t9dq</link>
      <description>The oxygen-tolerant and molybdenum-dependent formate dehydrogenase FdsDABG from &lt;i&gt;Cupriavidus necator&lt;/i&gt; is capable of catalyzing both formate oxidation to CO&lt;sub&gt;2&lt;/sub&gt; and the reverse reaction (CO&lt;sub&gt;2&lt;/sub&gt; reduction to formate) at neutral pH, which are both reactions of great importance to energy production and carbon capture. FdsDABG is replete with redox cofactors comprising seven Fe/S clusters, flavin mononucleotide, and a molybdenum ion coordinated by two pyranopterin dithiolene ligands. The redox potentials of these centers are described herein and assigned to specific cofactors using combinations of potential-dependent continuous wave and pulse EPR spectroscopy and UV/visible spectroelectrochemistry on both the FdsDABG holoenzyme and the FdsBG subcomplex. These data represent the first redox characterization of a complex metal dependent formate dehydrogenase and provide an understanding of the highly efficient catalytic formate oxidation and CO&lt;sub&gt;2&lt;/sub&gt; reduction...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/9fc8t9dq</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Harmer, Jeffrey R</name>
      </author>
      <author>
        <name>Hakopian, Sheron</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Bernhardt, Paul V</name>
      </author>
    </item>
    <item>
      <title>ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks</title>
      <link>https://escholarship.org/uc/item/98g718zp</link>
      <description>We address the problem of comparing multiple genome-wide maps representing nucleosome positions or specific histone marks. These maps can originate from the comparative analysis of ChIP-Seq/MNase-Seq/FAIRE-Seq data for different cell types/tissues or multiple time points. The input to the problem is a set of maps, each of which is a list of genomics locations for nucleosomes or histone marks. The output is an alignment of nucleosomes/histone marks across time points (that we call trajectories), allowing small movements and gaps in some of the maps. We present a tool called ThIEF (TrackIng of Epigenetic Features) that can efficiently compute these trajectories. ThIEF comes into two "flavors": ThIEF:Iterative finds the trajectories progressively using bipartite matching, while ThIEF:LP solves a k-partite matching problem on a hyper graph using linear programming. ThIEF:LP is guaranteed to find the optimal solution, but it is slower than ThIEF:Iterative. We demonstrate the utility...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/98g718zp</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Polishko, Anton</name>
      </author>
      <author>
        <name>Hasan, Md Abid</name>
      </author>
      <author>
        <name>Pan, Weihua</name>
      </author>
      <author>
        <name>Bunnik, Evelien M</name>
      </author>
      <author>
        <name>Le Roch, Karine</name>
        <uri>https://orcid.org/0000-0002-4862-9292</uri>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Conversion of a bifurcating ETF to a canonical ETF by site-directed mutagenesis.</title>
      <link>https://escholarship.org/uc/item/7wg6f95h</link>
      <description>In an effort to turn a bifurcating ETF (from Megasphaera elsdenii) into a canonical non-bifurcating ETF (from, e.g., Methylophilus methylotrophus), mutagenesis studies were performed to knock out the bf (bifurcating) FAD in Megasphaera elsdenii EtfAB. In order to determine the amino acid residues to mutate, the bf FAD binding site of Acidaminococcus fermentans (homolog to Megasphaera eldenii) was overlaid with the AMP binding site of Methylophilus methylotrophus. Two Megasphaera eldenii EtfAB variants were constructed, one with a single mutation (T132Y), and one with three (G130Q, T132Y, I234 M, also called 3X). These variants did not possess the bf FAD or reconstitute AMP in its place and could no longer be reduced by the median potential donor NADH. The oxidized spectra of the variants were very similar to the spectral contribution of the et (electron-transferring) FAD from the literature, indicating that there was no great difference in the immediate environment of the remaining...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/7wg6f95h</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Nguyen, Derek</name>
        <uri>https://orcid.org/0000-0003-2319-0989</uri>
      </author>
      <author>
        <name>Yoon, Sol</name>
      </author>
      <author>
        <name>Vigil, Wayne</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
    </item>
    <item>
      <title>COVID-19 associated rhabdomyolysis leading to major amputation in the absence of macrovascular thrombosis.</title>
      <link>https://escholarship.org/uc/item/7t8143fx</link>
      <description>A 50 year old patient presented with bilateral lower extremity weakness, lethargy, and dyspnea. Nasopharyngeal swab was positive for SARS-CoV-2. She progressed to acute hypoxemic respiratory failure and hemodynamic instability requiring intubation, pressor support, and hemodialysis. Maculopapular rashes developed on bilateral lower extremities with progressively worsening rhabdomyolysis. Bilateral lower extremity fasciotomies were performed with subsequent serial operative debridements to remove necrotic muscle. One month later, she required a right above knee amputation. There was no evidence of macrovascular thrombosis. A high clinical suspicion of rhabdomyolysis in COVID-19 patients is necessary to avoid major limb loss.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/7t8143fx</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Kar, Rahul</name>
      </author>
      <author>
        <name>Murga, Allen</name>
      </author>
      <author>
        <name>Teruya, Theodore</name>
      </author>
      <author>
        <name>Patel, Sheela</name>
      </author>
    </item>
    <item>
      <title>OMGS: Optical Map-Based Genome Scaffolding</title>
      <link>https://escholarship.org/uc/item/7kk4q071</link>
      <description>Due to the current limitations of sequencing technologies, de novo genome assembly is typically carried out in two stages, namely contig (sequence) assembly and scaffolding. While scaffolding is computationally easier than sequence assembly, the scaffolding problem can be challenging due to the high repetitive content of eukaryotic genomes, possible mis-joins in assembled contigs and inaccuracies in the linkage information. Genome scaffolding tools either use paired-end/mate-pair/linked/Hi-C reads or genome-wide maps (optical, physical or genetic) as linkage information. Optical maps (in particular Bionano Genomics maps) have been extensively used in many recent large-scale genome assembly projects (e.g., goat, apple, barley, maize, quinoa, sea bass, among others). However, the most commonly used scaffolding tools have a serious limitation: they can only deal with one optical map at a time, forcing users to alternate or iterate over multiple maps. In this paper, we introduce a...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/7kk4q071</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Pan, Weihua</name>
      </author>
      <author>
        <name>Jiang, Tao</name>
        <uri>https://orcid.org/0000-0003-3833-4498</uri>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Selfish: discovery of differential chromatin interactions via a self-similarity measure</title>
      <link>https://escholarship.org/uc/item/7k5638gx</link>
      <description>MOTIVATION: High-throughput conformation capture experiments, such as Hi-C provide genome-wide maps of chromatin interactions, enabling life scientists to investigate the role of the three-dimensional structure of genomes in gene regulation and other essential cellular functions. A fundamental problem in the analysis of Hi-C data is how to compare two contact maps derived from Hi-C experiments. Detecting similarities and differences between contact maps are critical in evaluating the reproducibility of replicate experiments and for identifying differential genomic regions with biological significance. Due to the complexity of chromatin conformations and the presence of technology-driven and sequence-specific biases, the comparative analysis of Hi-C data is analytically and computationally challenging.
RESULTS: We present a novel method called Selfish for the comparative analysis of Hi-C data that takes advantage of the structural self-similarity in contact maps. We define a novel...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/7k5638gx</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ardakany, Abbas Roayaei</name>
      </author>
      <author>
        <name>Ay, Ferhat</name>
        <uri>https://orcid.org/0000-0002-0708-6914</uri>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Insight into the high-potential branch of the alternate NAD+-dependent NADPH:ferredoxin oxidoreductase II (NfnII) from Pyrococcus furiosus: evidence for the gating step in electron bifurcation</title>
      <link>https://escholarship.org/uc/item/6t5214r7</link>
      <description>We have investigated the rapid-reaction kinetics of the NAD+-dependent NADPH:ferredoxin oxidoreductase II (NfnII) from Pyrococcus furiosus, permitting comparison with work done with the paralog NAD+-dependent NADPH:ferredoxin oxidoreductase (NfnI). The half-potentials of the electron-bifurcating L-FAD are highly crossed in NfnI, meaning that the potential for the quinone/semiquinone couple is significantly lower than that for the semiquinone/hydroquinone, so that the semiquinone oxidation state is thermodynamically unstable. The same appears to be true with NfnII, based on similar behavior in transient absorption spectroscopy experiments and the absence of FAD•- accumulation in the course of reductive titrations (manifested as a transient increase in absorbance at ∼380 nm). Reductive titrations with both the 1-electron donor sodium dithionite and two-electron donor NADPH demonstrate that, unlike NfnI, little FADH• accumulates in the high-potential pathway of NfnII, reflected in...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/6t5214r7</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ortiz, Steve</name>
      </author>
      <author>
        <name>Schut, Gerrit J</name>
      </author>
      <author>
        <name>Wiley, Seth A</name>
      </author>
      <author>
        <name>Lubner, Carolyn E</name>
      </author>
      <author>
        <name>Adams, Michael WW</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
    </item>
    <item>
      <title>How a Formate Dehydrogenase Responds to Oxygen: Unexpected O2 Insensitivity of an Enzyme Harboring Tungstopterin, Selenocysteine, and [4Fe-4S] Clusters</title>
      <link>https://escholarship.org/uc/item/6cg0c724</link>
      <description>ABSTRACT  The reversible two-electron interconversion of formate and CO 2 is catalyzed by both non-metallo and metallo-formate dehydrogenases (FDHs). The latter group comprises molybdenum-or tungsten-containing enzymes with the metal coordinated by two equivalents of a pyranopterin cofactor, a cysteinyl or selenocysteinyl ligand supplied by the polypeptide, and a catalytically essential terminal sulfido ligand. In addition, these biocatalysts incorporate one or more [4Fe-4S] clusters for facilitating long-distance electron transfer. But an interesting dichotomy arises when attempting to understand how the metallo-FDHs react with O 2 . Whereas existing scholarship portrays these enzymes as being unable to perform in air due to extreme O 2 lability of their metal centers, studies dating as far back as the 1930s emphasize that some of these systems exhibit formate oxidase (FOX) activity, coupling formate oxidation to O 2 reduction. Therefore, to reconcile these conflicting views,...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/6cg0c724</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Graham, Joel E</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Zane, Grant M</name>
      </author>
      <author>
        <name>Gui, Qin</name>
      </author>
      <author>
        <name>Hom, Kellie</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Wall, Judy D</name>
      </author>
      <author>
        <name>Raman, CS</name>
      </author>
    </item>
    <item>
      <title>Evaluating Imatinib's Affinities and Specificities for Tyrosine Kinases Using Molecular Dynamics Simulations</title>
      <link>https://escholarship.org/uc/item/5m15s9p5</link>
      <description>&lt;p&gt;Computational chemistry lets us model intermolecular interactions in ways assays cannot. My project focuses on the multi-kinase interactions of the cancer drug, imatinib. Most cancer drugs target one kinase, but some affect multiple kinases. Imatinib treats chronic myeloid leukemia by targeting ABL kinase. Proteomics data reveals it can interact with other kinases, such as KIT to treat gastrointestinal stromal tumors, but the mechanisms are unknown. Imatinib has different affinities for similar kinases, such as a 3000x difference between ABL and SRC, despite sharing 50% structural homology. Here, I investigate the conformational differences between free and imatinib-bound ABL, KIT, and SRC using Molecular Dynamics simulations to understand the key imatinib-kinase interactions. The alignment analysis shows the docked conformations are similar to co-crystal structures in the Protein Data Bank. Root-mean-square-deviation and fluctuation (RMSD and RMSF) analysis show that all simulations...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/5m15s9p5</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Troxel, William</name>
      </author>
      <author>
        <name>Chang, Chia-en</name>
        <uri>https://orcid.org/0000-0002-6504-8529</uri>
      </author>
    </item>
    <item>
      <title>Kinetic studies of bifurcating flavoproteins</title>
      <link>https://escholarship.org/uc/item/56v291sx</link>
      <description>Since their original proposal in 2008, a number of broadly distributed flavoprotein systems catalyzing electron bifurcation have been identified that play key roles in the bioenergetics of anaerobic bacteria and archaea. While the overall thermodynamics of flavin-based electron bifurcation are now quite well-understood, the same cannot be said of their kinetic behavior. The present account represents a summary of results obtained with several electron-electron bifurcating systems, shamelessly focusing on work done in the authors' laboratory.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/56v291sx</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Vigil, Wayne</name>
      </author>
      <author>
        <name>Tran, Jessica</name>
      </author>
      <author>
        <name>Ortiz, Steve</name>
      </author>
      <author>
        <name>Menjivar, Kevin</name>
      </author>
      <author>
        <name>Nguyen, Derek</name>
      </author>
    </item>
    <item>
      <title>Bisulfite‐Conversion‐Based Methods for DNA Methylation Sequencing Data Analysis</title>
      <link>https://escholarship.org/uc/item/52x9m11r</link>
      <description>Various techniques are available to profile DNA methylation, either genome‐wide or targeted at specific regions, such as CpG islands and gene promoters. In general, these techniques are divided into two categories: enrichment based and bisulfite conversion based methods. DNA methylation has been associated with gene expression, imprinting, transposon silencing, X‐chromosome inactivation, embryonic development, and cancer. Bisulfite‐conversion‐based methods involve the following three steps: chemical conversion of non‐methylated cytosines to uracils by treating DNA with sodium bisulfite; PCR amplification, and sequencing size‐selected DNA fragments. Sequencing errors, adapter contamination, end‐repair, and single‐nucleotide polymorphisms (SNPs) may affect erroneous methylation calls. Two common major performance measurements of an aligner for BS‐reads are mapping accuracy and methylation call accuracy. Both local alignment and alignment with indels are needed in order to map the...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/52x9m11r</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Harris, Elena</name>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>How a Formate Dehydrogenase Responds to Oxygen: Unexpected O2 Insensitivity of an Enzyme Harboring Tungstopterin, Selenocysteine, and [4Fe–4S] Clusters</title>
      <link>https://escholarship.org/uc/item/4tj2672q</link>
      <description>The reversible two-electron interconversion of formate and CO2 is catalyzed by both nonmetallo- and metallo-formate dehydrogenases (FDHs). The latter group comprises molybdenum- or tungsten-containing enzymes with the metal coordinated by two equivalents of a pyranopterin cofactor, a cysteinyl or selenocysteinyl (Sec) ligand supplied by the polypeptide, and a catalytically essential terminal sulfido ligand. In addition, these biocatalysts incorporate one or more [4Fe–4S] clusters for facilitating long-distance electron transfer. However, an interesting dichotomy arises when attempting to understand how the metallo-FDHs react with O2. Whereas existing scholarship portrays these enzymes as being unable to perform in air due to extreme O2 lability of their metal centers, studies dating as far back as the 1930s emphasize that some of these systems exhibit formate oxidase (FOX) activity, coupling formate oxidation to O2 reduction. Therefore, to reconcile these conflicting views, we...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/4tj2672q</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Graham, Joel E</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Zane, Grant M</name>
      </author>
      <author>
        <name>Gui, Qin</name>
      </author>
      <author>
        <name>Hom, Kellie</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Wall, Judy D</name>
      </author>
      <author>
        <name>Raman, CS</name>
      </author>
    </item>
    <item>
      <title>Spectral deconvolution of electron-bifurcating flavoproteins</title>
      <link>https://escholarship.org/uc/item/4kk3z0j4</link>
      <description>Electron-bifurcating flavoproteins catalyze the tightly coupled reduction of high- and low-potential acceptors using a median-potential electron donor, and are invariably complex systems with multiple redox-active centers in two or more subunits. Methods are described that permit, in favorable cases, the deconvolution of spectral changes associated with reduction of specific centers, making it possible to dissect the overall process of electron bifurcation into individual, discrete steps.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/4kk3z0j4</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ortiz, Steve</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Vigil, Wayne</name>
      </author>
      <author>
        <name>Tran, Jessica</name>
      </author>
      <author>
        <name>Lubner, Carolyn E</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
    </item>
    <item>
      <title>Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps</title>
      <link>https://escholarship.org/uc/item/3sf0x1ph</link>
      <description>Continuous improvements to high-throughput conformation capture (Hi-C) are revealing richer information about the spatial organization of the chromatin and its role in cellular functions. Several studies have confirmed the existence of structural features of the genome 3D organization that are stable across cell types and conserved across species, called topological associating domains (TADs). The detection of TADs has become a critical step in the analysis of Hi-C data, e.g., to identify enhancer-promoter associations. Here we present East, a novel TAD identification algorithm based on fast 2D convolution of Haar-like features, that is as accurate as the state-of-the-art method based on the directionality index, but 75-80× faster. East is available in the public domain at https://github.com/ucrbioinfo/EAST.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3sf0x1ph</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ardakany, Abbas Roayaei</name>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Heterogeneous CPU+GPU-Enabled Simulations for DFTB Molecular Dynamics of Large Chemical and Biological Systems</title>
      <link>https://escholarship.org/uc/item/3jq3805b</link>
      <description>We introduce a new heterogeneous CPU+GPU-enhanced DFTB approach for the routine and efficient simulation of large chemical and biological systems. Compared to homogenous computing with conventional CPUs, heterogeneous computing approaches exhibit substantial performance with only a modest increase in power consumption, both of which are essential to upcoming exascale computing initiatives. We show that DFTB-based molecular dynamics is a natural candidate for heterogeneous computing since the computational bottleneck in these simulations is the diagonalization of the Hamiltonian matrix, which is performed several times during a single molecular dynamics trajectory. To thoroughly test and understand the performance of our heterogeneous CPU+GPU approach, we examine a variety of algorithmic implementations, benchmarks of different hardware configurations, and applications of this methodology on several large chemical and biological systems. Finally, to demonstrate the capability of...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3jq3805b</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Allec, Sarah I</name>
      </author>
      <author>
        <name>Sun, Yijing</name>
      </author>
      <author>
        <name>Sun, Jianan</name>
      </author>
      <author>
        <name>Chang, Chia-En A</name>
        <uri>https://orcid.org/0000-0002-6504-8529</uri>
      </author>
      <author>
        <name>Wong, Bryan</name>
        <uri>https://orcid.org/0000-0002-3477-8043</uri>
      </author>
    </item>
    <item>
      <title>Significance and amplification methods of the purine salvage pathway in human brain cells</title>
      <link>https://escholarship.org/uc/item/2z41w356</link>
      <description>Previous studies suggest that uric acid or reactive oxygen species, products of xanthine oxidoreductase (XOR), may associate with neurodegenerative diseases. However, neither relationship has ever been firmly established. Here, we analyzed human brain samples, obtained under protocols approved by research ethics committees, and found no expression of XOR and only low levels of uric acid in various regions of the brain. In the absence of XOR, hypoxanthine will be preserved and available for incorporation into the purine salvage pathway. To clarify the importance of salvage in the brain, we tested using human-induced pluripotent stem cell-derived neuronal cells. Stable isotope analyses showed that the purine salvage pathway was more effective for ATP synthesis than purine de novo synthesis. Blood uric acid levels were related to the intracellular adenylate pool (ATP&amp;nbsp;+ ADP&amp;nbsp;+ AMP), and reduced levels of this pool result in lower uric acid levels. XOR inhibitors are related...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2z41w356</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Sekine, Mai</name>
      </author>
      <author>
        <name>Fujiwara, Megumi</name>
      </author>
      <author>
        <name>Okamoto, Ken</name>
      </author>
      <author>
        <name>Ichida, Kimiyoshi</name>
      </author>
      <author>
        <name>Nagata, Koji</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Nishino, Takeshi</name>
      </author>
    </item>
    <item>
      <title>Deconvolution of reduction potentials of formate dehydrogenase from Cupriavidus necator</title>
      <link>https://escholarship.org/uc/item/2xg7010f</link>
      <description>The formate dehydrogenase enzyme from Cupriavidus necator (FdsABG) carries out the two-electron oxidation of formate to CO2, but is also capable of reducing CO2 back to formate, a potential biofuel. FdsABG is a heterotrimeric enzyme that performs this transformation using nine redox-active cofactors: a bis(molybdopterin guanine dinucleotide) (bis-MGD) at the active site coupled to seven iron–sulfur clusters, and one equivalent of flavin mononucleotide (FMN). To better understand the pathway of electron flow in FdsABG, the reduction potentials of the various cofactors were examined through direct electrochemistry. Given the redundancy of cofactors, a truncated form of the FdsA subunit was developed that possesses only the bis-MGD active site and a singular [4Fe–4S] cluster. Electrochemical characterization of FdsABG compared to truncated FdsA shows that the measured reduction potentials are remarkably similar despite the truncation with two observable features at − 265&amp;nbsp;mV...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2xg7010f</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Walker, Lindsey M</name>
      </author>
      <author>
        <name>Li, Bin</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Elliott, Sean J</name>
      </author>
    </item>
    <item>
      <title>RAmbler: de novo genome assembly of complex repetitive regions</title>
      <link>https://escholarship.org/uc/item/2cv9x5hn</link>
      <description>Complex repetitive regions (also known as segmental duplications) in eukaryotic genomes often contain essential functional and regulatory information. Despite remarkable algorithmic progress in genome assembly in the last twenty years, modern de novo assemblers still struggle to accurately reconstruct these highly repetitive regions. When sequenced reads will be long enough to span all repetitive regions, the problem will be solved trivially. However, even the third generation of sequencing technologies on the market cannot yet produce reads that are sufficiently long (and accurate) to span every repetitive region in large eukaryotic genomes. In this work, we introduce a novel algorithm called RAmbler to resolve complex repetitive regions based on high-quality long reads (i.e., PacBio HiFi). We first identify potentially repetitive regions by mapping the HiFi reads to the draft genome assembly. Regions with sequencing coverage much higher then the average indicate a collapsed...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2cv9x5hn</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chakravarty, Sakshar</name>
      </author>
      <author>
        <name>Logsdon, Glennis</name>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Reversible enzyme-catalysed NAD + /NADH electrochemistry</title>
      <link>https://escholarship.org/uc/item/1kx9z81d</link>
      <description>Formate dehydrogenase (FdsDABG) from &lt;i&gt;Cupriavidus necator&lt;/i&gt; is a Mo-containing enzyme capable of catalysing both formate oxidation to CO&lt;sub&gt;2&lt;/sub&gt; and the reverse CO&lt;sub&gt;2&lt;/sub&gt; reduction to formate by utilising NAD&lt;sup&gt;+&lt;/sup&gt; or NADH, respectively. This enzyme is part of the NADH dehydrogenase superfamily. Its subcomplex, FdsBG, lacking the formate oxidizing/CO&lt;sub&gt;2&lt;/sub&gt;-reducing Mo-cofactor, but harbouring an FMN as well as [2Fe-2S] and [4Fe-4S] clusters, reversibly interconverts the NAD&lt;sup&gt;+&lt;/sup&gt;/NADH redox pair. UV-vis spectroelectrochemistry across the range 6 &amp;lt; pH &amp;lt; 8 determined the redox potentials of these three cofactors. Cyclic voltammetry was used to explore mechanistic and kinetic properties of each oxidation- and reduction-half reaction. Through mediated enzyme electrochemistry experiments, the Michaelis constant for NADH oxidation (&lt;i&gt;K&lt;/i&gt; &lt;sub&gt;M,NADH&lt;/sub&gt; = 1.7 × 10&lt;sup&gt;2&lt;/sup&gt; μM) was determined using methylene blue as a redox mediator. For the...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/1kx9z81d</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Giang, Peter D</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hakopian, Sheron</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Bernhardt, Paul V</name>
      </author>
    </item>
    <item>
      <title>Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mers</title>
      <link>https://escholarship.org/uc/item/11p5f3sc</link>
      <description>The growing number of metagenomic studies in medicine and environmental sciences is creating new computational demands in the analysis of these very large datasets. We have recently proposed a time-efficient algorithm called Clark that can accurately classify metagenomic sequences against a set of reference genomes. The competitive advantage of Clark depends on the use of discriminative contiguousk-mers. In default mode, Clark’s speed is currently unmatched and its precision is comparable to the state-of-the-art, however, its sensitivity still does not match the level of the most sensitive (but slowest) metagenomic classifier. In this paper, we introduce an algorithmic improvement that allows Clark’s classification sensitivity to match the best metagenomic classifier, without a significant loss of speed or precision compared to the original version. Finally, on real metagenomes, Clark can assign with high accuracy a much higher proportion of short reads than its closest competitor....</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/11p5f3sc</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ounit, Rachid</name>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>The Reversible Electrochemical Interconversion of Formate and CO2 by Formate Dehydrogenase from Cupriavidus necator</title>
      <link>https://escholarship.org/uc/item/10f6f5vc</link>
      <description>The bacterial molybdenum (Mo)-containing formate dehydrogenase (FdsDABG) from &lt;i&gt;Cupriavidus necator&lt;/i&gt; is a soluble NAD&lt;sup&gt;+&lt;/sup&gt;-dependent enzyme belonging to the DMSO reductase family. The holoenzyme is complex and possesses nine redox-active cofactors including a bis(molybdopterin guanine dinucleotide) (bis-MGD) active site, seven iron-sulfur clusters, and 1 equiv of flavin mononucleotide (FMN). FdsDABG catalyzes the two-electron oxidation of HCOO&lt;sup&gt;-&lt;/sup&gt; (formate) to CO&lt;sub&gt;2&lt;/sub&gt; and reversibly reduces CO&lt;sub&gt;2&lt;/sub&gt; to HCOO&lt;sup&gt;-&lt;/sup&gt; under physiological conditions close to its thermodynamic redox potential. Here we develop an electrocatalytically active formate oxidation/CO&lt;sub&gt;2&lt;/sub&gt; reduction system by immobilizing FdsDABG on a glassy carbon electrode in the presence of coadsorbents such as chitosan and glutaraldehyde. The reversible enzymatic interconversion between HCOO&lt;sup&gt;-&lt;/sup&gt; and CO&lt;sub&gt;2&lt;/sub&gt; by FdsDABG has been realized with cyclic voltammetry using...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/10f6f5vc</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Kalimuthu, Palraj</name>
      </author>
      <author>
        <name>Hakopian, Sheron</name>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Bernhardt, Paul V</name>
      </author>
    </item>
    <item>
      <title>Comparative structural analysis of protein complexes with SPICE.</title>
      <link>https://escholarship.org/uc/item/0qj532xn</link>
      <description>Computational tools for studying the structure of protein complexes are essential for providing mechanistic insights into protein-protein interactions and therapeutic drug design. Here, we present SPICE (Structural Protein Interaction Complex Evaluator), a web-based platform that allows structural biologists to perform rapid, modular analyses of protein complexes directly from Protein Data Bank (PDB) structures. SPICE allows users to define and execute analysis workflows via an intuitive web interface, reducing analysis times from minutes to seconds. The platform offers a broad range of analytical capabilities, including (i) detection of hydrogen bonds, salt bridges, and disulfide bonds; (ii) protein-protein interface mapping; and (iii) computation of solvent accessibility, van der Waals energetics, and other key geometric descriptors. SPICE further provides interactive 3D visualization and supports comparative analyses across multiple complexes, enabling the study of mutational...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0qj532xn</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Ashraf, Faisal Bin</name>
        <uri>https://orcid.org/0000-0003-4006-5389</uri>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Chapter Eleven Reductive activation of CO2 by formate dehydrogenases</title>
      <link>https://escholarship.org/uc/item/0k77n7w0</link>
      <description>Two factors, climate change brought on by rising atmospheric CO&lt;sub&gt;2&lt;/sub&gt; levels and the accelerating shift toward renewable energy sources, have together worked to heighten interest in understanding how biological catalysts so effectively bring about the reduction of CO&lt;sub&gt;2&lt;/sub&gt; to formate, with potential applications for both bioremediation and energy storage. Most metal-dependent formate dehydrogenases, containing either molybdenum or tungsten in their active sites, function physiologically in the direction of formate oxidation to CO&lt;sub&gt;2&lt;/sub&gt;, but it has become clear that many, if not all, are also effective in catalyzing the reverse reaction. In this chapter, we describe methods for isolating and characterizing these enzymes.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0k77n7w0</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Niks, Dimitri</name>
      </author>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
    </item>
    <item>
      <title>Application of EPR and related methods to molybdenum-containing enzymes</title>
      <link>https://escholarship.org/uc/item/0jx9f2js</link>
      <description>A description is provided of the contributions made to our understanding of molybdenum-containing enzymes through the application of electron paramagnetic resonance spectroscopy and related methods, by way of illustrating how these can be applied to better understand enzyme structure and function. An emphasis is placed on the use of EPR to identify both the coordination environment of the molybdenum coordination sphere as well as the structures of paramagnetic intermediates observed transiently in the course of reaction that have led to the elucidation of reaction mechanism.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0jx9f2js</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hille, Russ</name>
        <uri>https://orcid.org/0000-0002-1891-8958</uri>
      </author>
      <author>
        <name>Niks, Dimitri</name>
      </author>
    </item>
    <item>
      <title>mClass: Cancer Type Classification with Somatic Point Mutation Data</title>
      <link>https://escholarship.org/uc/item/0gx8r0hn</link>
      <description>Cancer is a complex disease associated with abnormal DNA mutations. Not all tumors are cancerous and not all cancers are the same. Correct cancer type diagnosis can indicate the most effective drug therapy and increase survival rate. At the molecular level, it has been shown that cancer type classification can be carried out from the analysis of somatic point mutation. However, the high dimensionality and sparsity of genomic mutation data, coupled with its small sample size has been a hindrance in accurate classification of cancer. We address these problems by introducing a novel classification method called mClass that accounts for the sparsity of the data. mClass is a feature selection method that ranks genes based on their similarity across samples and employs their normalized mutual information to determine the set of genes that provide optimal classification accuracy. Experimental results on TCGA datasets show that mClass significantly improves testing accuracy compared to...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0gx8r0hn</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hasan, Md Abid</name>
      </author>
      <author>
        <name>Lonardi, Stefano</name>
        <uri>https://orcid.org/0000-0002-2696-7274</uri>
      </author>
    </item>
    <item>
      <title>Cultural Tightness Predicts Regional Sociopolitical Ideologies, Beliefs, and Personality Traits</title>
      <link>https://escholarship.org/uc/item/04d287c8</link>
      <description>Cultural tightness
                    refers to the strength of social norms and tolerance for norm violations within regions. In two studies, we investigated the link between cultural tightness and sociopolitical ideologies, beliefs, and personality traits within the United States and across 56 nations. We relied on two separate operationalizations of cultural tightness and aggregated self-reported sociopolitical ideologies, beliefs, and personality trait data from tens of thousands of geolocated internet respondents. Regression analyses suggest that more culturally tight U.S. states are less open, more conscientious, and higher in the need for certainty. Tighter states also more strongly endorse racial stereotyping, right-wing authoritarianism, and other system-justifying beliefs, but less weakly endorse egalitarianism. In addition, tighter nations are lower in extraversion and creativity. Taken together, we find that cultural tightness is a parsimonious predictor of regional...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/04d287c8</guid>
      <pubDate>Thu, 21 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Wilson, Liz</name>
        <uri>https://orcid.org/0000-0002-8068-980X</uri>
      </author>
      <author>
        <name>Calanchini, Jimmy</name>
        <uri>https://orcid.org/0000-0003-1959-143X</uri>
      </author>
    </item>
    <item>
      <title>Associations between iron and mean kurtosis in iron-rich grey matter nuclei in aging</title>
      <link>https://escholarship.org/uc/item/41w6w2sc</link>
      <description>ObjectiveElevated kurtosis values have been observed in subcortical grey matter structures of patients with neurodegenerative diseases. Here, we examined relationships between iron measures and kurtosis in iron-rich subcortical grey matter structures.Please check and confirm the affiliation 4 for the author "Xiaoping P. Hu".Affiliation 4 for Xiaoping P. Hu was incorrect since he is not associated with that department. We have removed this affiliation.
Thanks!&amp;nbsp;Materials and methodsMulti-shell diffusion and multi-echo gradient echo acquisitions were used to derive mean kurtosis and iron measures (R2* and magnetic susceptibility), respectively, in subcortical grey matter nuclei and white matter tracts in a discovery cohort (110 healthy older and 63 younger adults) and replication cohort (72 healthy older adults).Please confirm if the author names are presented accurately and in the correct sequence (Ilana J. Bennett and Xiaoping P. Hu). Also, kindly confirm the details in the...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/41w6w2sc</guid>
      <pubDate>Mon, 18 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Langley, Jason</name>
      </author>
      <author>
        <name>Solis, Kitzia</name>
      </author>
      <author>
        <name>Masjedizadeh, Vala</name>
      </author>
      <author>
        <name>Shao, Murphy</name>
      </author>
      <author>
        <name>Bennett, Ilana J</name>
        <uri>https://orcid.org/0000-0002-5330-4679</uri>
      </author>
      <author>
        <name>Hu, Xiaoping P</name>
      </author>
    </item>
    <item>
      <title>Health management strategies of resilient honey bee stock throughout Southern California</title>
      <link>https://escholarship.org/uc/item/9td8417k</link>
      <description>Significant losses of managed honey bees (Apis mellifera) have been documented in recent years, driven by multiple stressors including parasites, pesticide exposure, and environmental change. To mitigate escalating hive losses, some beekeepers in Southern California collect and propagate locally occurring, free-living colonies, often referred to as "survivor" or "Californian" honey bees, that persist with limited human intervention. We conducted a cross-sectional survey of beekeepers managing colonies in Southern California to compare management practices and reported outcomes across stock types. Beekeepers clustered into 3 groups: those managing only commercial colonies (35.3%), only Californian colonies (29.4%), or a mixture of both (35.3%). Respondents indicated that management practices had been adapted when keeping Californian honey bees and reported reduced expenditures associated with queen replacement and disease management. These bees were widely perceived to possess...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/9td8417k</guid>
      <pubDate>Fri, 8 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chong-Echavez, Genesis</name>
      </author>
      <author>
        <name>Webb, Jessica</name>
      </author>
      <author>
        <name>Maciejovsky, Boris</name>
      </author>
      <author>
        <name>Baer, Boris</name>
        <uri>https://orcid.org/0000-0002-1136-5967</uri>
      </author>
    </item>
    <item>
      <title>Spatially varying deep functional neural network: application in large-scale crop yield prediction</title>
      <link>https://escholarship.org/uc/item/7xt546s8</link>
      <description>Abstract Accurate prediction of crop yield is critical for supporting food security, agricultural planning, and economic decision-making. However, yield forecasting remains a significant challenge due to the complex and nonlinear relationships between weather variables and crop production, as well as spatial heterogeneity across agricultural regions. We propose a Spatially Varying Deep Functional Neural Network (SVD-funNet), a deep neural network architecture that integrates functional and scalar predictors with spatially varying coefficients and spatial random effects. The method is designed to flexibly model spatially indexed functional data, such as daily temperature curves, and their relationship to variability in the response, while accounting for spatial correlation. SVD-funNet mitigates the curse of dimensionality through a low-rank structure inspired by the spatially varying functional index model (SVFIM). Through comprehensive simulations, we demonstrate that SVD-funNet...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/7xt546s8</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Park, Yeonjoo</name>
      </author>
      <author>
        <name>Li, Bo</name>
      </author>
      <author>
        <name>Li, Yehua</name>
      </author>
    </item>
    <item>
      <title>Sacrificing Humans for Insects and AI</title>
      <link>https://escholarship.org/uc/item/6697q6hr</link>
      <description>Sacrificing Humans for Insects and AI</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/6697q6hr</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Schwitzgebel, Eric</name>
        <uri>https://orcid.org/0000-0003-4908-7074</uri>
      </author>
      <author>
        <name>Sinnott-Armstrong, Walter</name>
      </author>
    </item>
    <item>
      <title>Infections with the Sexually Transmitted Pathogen Nosema apis Trigger an Immune Response in the Seminal Fluid of Honey Bees (Apis mellifera)</title>
      <link>https://escholarship.org/uc/item/58v5403w</link>
      <description>Honey bee (Apis mellifera) males are highly susceptible to infections with the sexually transmitted fungal pathogen Nosema apis. However, they are able to suppress this parasite in the ejaculate using immune molecules in the seminal fluid. We predicted that males respond to infections by altering the seminal fluid proteome to minimize the risk to sexually transmit the parasite to the queen and her colony. We used iTRAQ isotopic labeling to compare seminal fluid proteins from infected and noninfected males and found that N. apis infections resulted in significant abundance changes in 111 of the 260 seminal fluid proteins quantitated. The largest group of proteins with significantly changed abundances consisted of 15 proteins with well-known immune-related functions, which included two significantly more abundant chitinases in the seminal fluid of infected males. Chitinases were previously hypothesized to be involved in honey bee antifungal activity against N. apis. Here we show...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/58v5403w</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Grassl, Julia</name>
      </author>
      <author>
        <name>Peng, Yan</name>
      </author>
      <author>
        <name>Baer-Imhoof, Barbara</name>
      </author>
      <author>
        <name>Welch, Mat</name>
      </author>
      <author>
        <name>Millar, A Harvey</name>
      </author>
      <author>
        <name>Baer, Boris</name>
        <uri>https://orcid.org/0000-0002-1136-5967</uri>
      </author>
    </item>
    <item>
      <title>Fearlessness and human justice: Exploring Guru Tegh Bahadur’s teachings and sacrifice from a fresh perspective</title>
      <link>https://escholarship.org/uc/item/3t47n1kj</link>
      <description>This article explores the state of fearlessness and human justice through an examination of five celebrated couplets from Guru Tegh Bahadur’s bāṇī (‘inspired utterances’) by placing them in their immediate historical context, followed by an understanding of their wider significance from a global perspective. The main arguments of this essay revolve around the critical situation in Mughal India leading to the ninth Guru’s execution at Chandni Chowk in Delhi on 11 November 1675, by the orders of Emperor Aurangzeb. Rectifying skewed perspectives offered by modern historians in which the death of the ninth Guru is simply an accident of history and therefore of no consequence to wider humanity, this essay offers a critical review of historical readings of events that forced Guru Tegh Bahadur to intervene in the flow of history on behalf of downtrodden and minority voices. To bring the people out of their vulnerability he inspired them with a bold message of resistance against the tyrannical...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3t47n1kj</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Singh, Pashaura</name>
      </author>
    </item>
    <item>
      <title>Aristotle On Two-Way Powers</title>
      <link>https://escholarship.org/uc/item/2j79g509</link>
      <description>Abstract This paper offers a reading of Aristotle’s view of two-way powers and points out where related views about Aristotle and two-way powers can go wrong. It argues that Aristotelian two-way powers consist in, and are based in, systematic knowledge; that they are all, without exception, principles of change in another, or in oneself as other; and that the topic of voluntary action in Aristotle is a quite different topic. It follows from this that the Aristotelian view of two-way powers has nothing much to do with freedom. The paper also argues that Aristotle’s view of two-way powers is the best in the history of Western philosophy, because it’s the only view on which both contrary exercises of the power are explained as no accident, relative to the power. Subsequent views of two-way powers tend to violate the general principle that powers explain their actualizations as no accident, relative to the power.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2j79g509</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Frost, Kim</name>
      </author>
    </item>
    <item>
      <title>Red or blue: The influence of CEO political orientation and situational context on acquisition behavior</title>
      <link>https://escholarship.org/uc/item/0xs3g4qt</link>
      <description>Whether–and under what conditions–CEO political orientation impacts major corporate decisions, such as acquisitions, remains an open question. As prior work has found mixed evidence regarding whether liberal or conservative CEO exhibit greater acquisitiveness, our understanding of the true relationship between political orientation and acquisition behavior remains uncertain. We draw on Upper Echelons Theory, the Threat Constraint Model from political psychology, and individual incentives theorizing to argue that the effect of CEO political orientation on acquisitions is contingent on situational threats and opportunities. These contextual forces can prompt liberal and conservative CEOs to diverge from their baseline acquisition tendencies. Consistent with this framework, our results provide evidence that while, on average, liberal-leaning CEOs are more open towards acquisitions, greater threats in the form of higher industry dynamism, complexity, and economic contraction lead...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0xs3g4qt</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Kolev, Kalin D</name>
      </author>
      <author>
        <name>Wuorinen, Stefan</name>
      </author>
      <author>
        <name>McNamara, Gerry</name>
      </author>
      <author>
        <name>Haleblian, Jerayr John</name>
      </author>
    </item>
    <item>
      <title>Sikh Kirtan &amp;amp; its journeys: Instruments, theories, technologies</title>
      <link>https://escholarship.org/uc/item/0538f3f5</link>
      <description>Sikh Kirtan &amp;amp; its journeys: Instruments, theories, technologies</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0538f3f5</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Singh, Pashaura</name>
      </author>
    </item>
    <item>
      <title>Managing Acute Uncertainty</title>
      <link>https://escholarship.org/uc/item/01d2d9rm</link>
      <description>Life is full of uncertainty about the future. Some uncertainty is stressful and anxiety-provoking, some is comforting and protective, and some can even be pleasurable. This chapter addresses the various ways people manage uncertainty about the future. We first consider situations in which uncertainty is aversive, namely during stressful waiting periods. People regularly wait for feedback about their academic, professional, personal, and financial prospects, and most people find these waiting periods to be unpleasantly fraught with worry. Two theoretical models, the Uncertainty Navigation Model and the newer Emotion-Motivation-Obstruction (EMO) model, guide our coverage of aversive uncertainty and provide a roadmap to the subjective experiences, health consequences, and coping efforts such situation entail. We then turn to situations in which uncertainty is desirable. People regularly avoid information to which they have ready access, even when acquiring the information may benefit...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/01d2d9rm</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Sweeny, Kate</name>
      </author>
      <author>
        <name>Howell, Jennifer L</name>
      </author>
    </item>
    <item>
      <title>Varroa mite resistance in a hybrid honey bee (Apis mellifera) population in Southern California</title>
      <link>https://escholarship.org/uc/item/00c7t43v</link>
      <description>Honey bees (Apis mellifera) are important ecological and agricultural pollinators. In the United States, beekeepers experience substantial annual colony losses, largely driven by parasites such as the mite Varroa destructor. We studied a Californian hybrid honey bee population in Southern California, a genetic mix of Western European, Eastern European, Middle Eastern, and African lineages. We predicted that these bees would show lower mite infestation levels because they survive and persist without human intervention. To test this, we monitored 236 colonies over a four-year period. We found that Californian hybrid honey bee colonies consistently had lower mite infestation rates compared to colonies headed by queens from a commercial stock. Consequently, they exceeded standard treatment thresholds (≥ 3 mites per 100 worker bees) less frequently and therefore received fewer miticide treatments. We then conducted laboratory-based-choice assays to test whether colony-level differences...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/00c7t43v</guid>
      <pubDate>Thu, 7 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chong-Echavez, Genesis</name>
      </author>
      <author>
        <name>Baer, Boris</name>
        <uri>https://orcid.org/0000-0002-1136-5967</uri>
      </author>
    </item>
    <item>
      <title>Economic Incentives for COVID‐19 Vaccination Among Employees of a Safety‐Net Health System and Medical Center in Southern California: A Cross‐Sectional Study</title>
      <link>https://escholarship.org/uc/item/59t196m4</link>
      <description>Background and Aims: Healthcare workers (HCWs) were pivotal in delivering care during the COVID-19 pandemic, yet vaccination uptake in the United States was lower than anticipated. This study investigated whether economic incentives, paid time off (PTO), raffle entry, or a direct financial incentive could influence vaccine uptake among HCWs exhibiting greater vaccine hesitancy.
Methods: We conducted a cross-sectional survey in a large integrated safety-net health system. Using an adapted Vaccine Hesitancy Scale (VHS), employees were classified as "more" vs "less" hesitant. For each incentive, respondents indicated whether it would influence their vaccination decision. Multivariable logistic regression estimated associations between demographic (age, gender, race/ethnicity, household income, education, marital status) and employment factors (job type, COVID-19 exposure, pandemic impact on income/employment) and reported influence.
Results: Of 684 respondents with complete hesitancy...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/59t196m4</guid>
      <pubDate>Wed, 6 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Khurana, Dhruv</name>
        <uri>https://orcid.org/0000-0002-3108-9517</uri>
      </author>
      <author>
        <name>Garcia, Lauren</name>
      </author>
      <author>
        <name>Freund, Debbie</name>
      </author>
      <author>
        <name>Firek, Anthony</name>
      </author>
      <author>
        <name>Gatto, Nicole M</name>
        <uri>https://orcid.org/0000-0001-7873-8310</uri>
      </author>
    </item>
    <item>
      <title>FamilyBloom: Examining Ecologies of Collaboration in Family-Centered Health Tracking</title>
      <link>https://escholarship.org/uc/item/2hs1f70b</link>
      <description>Family health informatics tools can help support well-being with shared data tracking. Prior work typically focused on shared data review, but often in specific moments, like bedtime, or centered on caregiving of children or elderly members. To investigate how tracking can support mutual health collaboration between family members pervasively across daily contexts, we designed and deployed FamilyBloom, a glanceable smartwatch and home display system for mood and goal tracking. Twelve families with both neurotypical and ADHD members used FamilyBloom for three months on average. Our findings reveal how family-centered tracking created collaboration opportunities and tensions across multiple ecological systems: individual self-regulation, collaborations within family dynamics, involvement of care networks with varying trust levels, institutional school constraints and cultural stigma, and temporality of regular routines and crisis periods. We discuss an ecosystem-aware approach to...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2hs1f70b</guid>
      <pubDate>Wed, 6 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Silva, Lucas M</name>
      </author>
      <author>
        <name>Min, Aehong</name>
        <uri>https://orcid.org/0000-0002-3790-2126</uri>
      </author>
      <author>
        <name>Stefanidi, Evropi</name>
      </author>
      <author>
        <name>Cibrian, Franceli L</name>
      </author>
      <author>
        <name>Beltran, Jesus A</name>
      </author>
      <author>
        <name>Zeiler, Cassie</name>
      </author>
      <author>
        <name>Schuck, Sabrina</name>
      </author>
      <author>
        <name>Lakes, Kimberley D</name>
      </author>
      <author>
        <name>Hayes, Gillian R</name>
      </author>
      <author>
        <name>Epstein, Daniel A</name>
        <uri>https://orcid.org/0000-0002-2657-6345</uri>
      </author>
    </item>
    <item>
      <title>STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies</title>
      <link>https://escholarship.org/uc/item/0nt0t4k2</link>
      <description>The interdisciplinary nature of microbiome research, coupled with the generation of complex multi-omics data, makes knowledge sharing challenging. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines provide a checklist for the reporting of study information, experimental design and analytical methods within a scientific manuscript on human microbiome research. Here, in this Consensus Statement, we present the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines. The guidelines expand on STORMS and include 67 items to support the reporting and review of environmental (for example, terrestrial, aquatic, atmospheric and engineered), synthetic and non-human host-associated microbiome studies in a standardized and machine-actionable manner. Based on input from 248 researchers spanning 28 countries, we provide detailed guidance, including comparisons with STORMS, and case studies that demonstrate...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0nt0t4k2</guid>
      <pubDate>Wed, 6 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Kelliher, Julia M</name>
      </author>
      <author>
        <name>Mirzayi, Chloe</name>
      </author>
      <author>
        <name>Bordenstein, Sarah R</name>
      </author>
      <author>
        <name>Oliver, Aaron</name>
        <uri>https://orcid.org/0000-0002-0410-8284</uri>
      </author>
      <author>
        <name>Kellogg, Christina A</name>
      </author>
      <author>
        <name>Hatcher, Eneida L</name>
      </author>
      <author>
        <name>Berg, Maureen</name>
      </author>
      <author>
        <name>Baldrian, Petr</name>
      </author>
      <author>
        <name>Aljumaah, Mashael</name>
      </author>
      <author>
        <name>Miller, Cassandra Maria Luz</name>
      </author>
      <author>
        <name>Mungall, Christopher</name>
      </author>
      <author>
        <name>Novak, Vlastimil</name>
        <uri>https://orcid.org/0000-0001-7890-4593</uri>
      </author>
      <author>
        <name>Palucki, Alexis</name>
      </author>
      <author>
        <name>Smith, Ethan</name>
      </author>
      <author>
        <name>Tabassum, Nazifa</name>
      </author>
      <author>
        <name>Bonito, Gregory</name>
      </author>
      <author>
        <name>Brister, J Rodney</name>
      </author>
      <author>
        <name>Chain, Patrick SG</name>
      </author>
      <author>
        <name>Chen, Mingfei</name>
      </author>
      <author>
        <name>Degregori, Samuel</name>
      </author>
      <author>
        <name>Dundore-Arias, Jose Pablo</name>
      </author>
      <author>
        <name>Emerson, Joanne B</name>
        <uri>https://orcid.org/0000-0001-9983-5566</uri>
      </author>
      <author>
        <name>Moreira C. Fernandes, Vanessa</name>
      </author>
      <author>
        <name>Flores, Roberto</name>
      </author>
      <author>
        <name>Gonzalez, Antonio</name>
      </author>
      <author>
        <name>Hansen, Zoe A</name>
      </author>
      <author>
        <name>Jackson, Scott A</name>
      </author>
      <author>
        <name>Moustafa, Ahmed M</name>
      </author>
      <author>
        <name>Northen, Trent R</name>
        <uri>https://orcid.org/0000-0001-8404-3259</uri>
      </author>
      <author>
        <name>Pariente, Nonia</name>
      </author>
      <author>
        <name>Pett-Ridge, Jennifer</name>
      </author>
      <author>
        <name>Record, Sydne</name>
      </author>
      <author>
        <name>Reji, Linta</name>
      </author>
      <author>
        <name>Reysenbach, Anna-Louise</name>
      </author>
      <author>
        <name>Rich, Virginia I</name>
      </author>
      <author>
        <name>Richardson, Lorna</name>
      </author>
      <author>
        <name>Roux, Simon</name>
        <uri>https://orcid.org/0000-0002-5831-5895</uri>
      </author>
      <author>
        <name>Schriml, Lynn M</name>
      </author>
      <author>
        <name>Shabman, Reed S</name>
      </author>
      <author>
        <name>Sierra, Maria A</name>
      </author>
      <author>
        <name>Sullivan, Matthew B</name>
      </author>
      <author>
        <name>Sundaramurthy, Punithavathi</name>
      </author>
      <author>
        <name>Thibault, Katherine M</name>
      </author>
      <author>
        <name>Thompson, Luke R</name>
      </author>
      <author>
        <name>Tighe, Scott</name>
      </author>
      <author>
        <name>Vereen, Ethell</name>
      </author>
      <author>
        <name>Eloe-Fadrosh, Emiley A</name>
        <uri>https://orcid.org/0000-0002-8162-1276</uri>
      </author>
    </item>
    <item>
      <title>Developing health care provider knowledge, confidence, and cultural sensitivity through resident transgender training: a controlled educational study</title>
      <link>https://escholarship.org/uc/item/03x3b613</link>
      <description>BackgroundTransgender and gender-diverse (TGD) individuals face substantial health disparities as a result of discrimination and poor provider competence in understanding their health needs. Relatively little work has been done studying educational interventions targeted toward increasing residents’ knowledge and ability to treat TGD individuals with sensitivity. We studied the effectiveness of implementing a lecture series on transgender health in preparing internal medicine residents to care for the TGD population.MethodsBoth study and control participants were recruited through their affiliated internal medicine residency programs. The study design was a pre-post controlled educational study. A lecture series was developed at Riverside University Health System as the educational intervention. We used a Transgender Assessment survey developed for the study to determine changes in the residents’ knowledge, self-confidence, and knowledge of barriers to care during the study period...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/03x3b613</guid>
      <pubDate>Wed, 6 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Huang, Kathie</name>
      </author>
      <author>
        <name>Yang, Almira J</name>
      </author>
      <author>
        <name>Skoretz, Lynnetta</name>
      </author>
      <author>
        <name>Firek, Anthony</name>
        <uri>https://orcid.org/0000-0001-6649-2798</uri>
      </author>
      <author>
        <name>Khurana, Dhruv</name>
        <uri>https://orcid.org/0000-0002-3108-9517</uri>
      </author>
    </item>
    <item>
      <title>The Simons Observatory: forecasted constraints on primordial gravitational waves with the expanded array of Small Aperture Telescopes</title>
      <link>https://escholarship.org/uc/item/8cq8099f</link>
      <description>We present updated forecasts for the scientific performance of the degree-scale (0.5 deg FWHM at 93 GHz), deep-field survey to be conducted by the Simons Observatory (SO). By 2027, the SO Small Aperture Telescope (SAT) complement will be doubled from three to six telescopes, including a doubling of the detector count in the 93 GHz and 145 GHz channels to 48,160 detectors. Combined with a planned extension of the survey duration to 2035, this expansion will significantly enhance SO's search for a B-mode signal in the polarisation of the cosmic microwave background, a potential signature of gravitational waves produced in the very early Universe. Assuming a 1/f noise model with knee multipole ℓknee = 50 and a moderately complex model for Galactic foregrounds, we forecast a 1σ (or 68% confidence level) constraint on the tensor-to-scalar ratio r of σr = 1.2 × 10-3, assuming no primordial B-modes are present. This forecast assumes that 70% of the B-mode lensing signal can ultimately...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/8cq8099f</guid>
      <pubDate>Tue, 5 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Abril-Cabezas, I</name>
      </author>
      <author>
        <name>Adachi, S</name>
      </author>
      <author>
        <name>Ade, P</name>
      </author>
      <author>
        <name>Adler, AE</name>
        <uri>https://orcid.org/0000-0002-5736-5524</uri>
      </author>
      <author>
        <name>Agrawal, P</name>
      </author>
      <author>
        <name>Aguirre, J</name>
      </author>
      <author>
        <name>Aiola, S</name>
      </author>
      <author>
        <name>Alford, T</name>
      </author>
      <author>
        <name>Ali, A</name>
      </author>
      <author>
        <name>Alonso, D</name>
      </author>
      <author>
        <name>Alvarez, MA</name>
      </author>
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        <name>Cho, HS</name>
      </author>
      <author>
        <name>Choi, SK</name>
        <uri>https://orcid.org/0000-0002-9113-7058</uri>
      </author>
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        <name>Chu, M</name>
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        <name>Clancy, J</name>
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        <name>Di Mascolo, L</name>
      </author>
    </item>
    <item>
      <title>The Atacama Cosmology Telescope: DR6 maps</title>
      <link>https://escholarship.org/uc/item/5cq952t2</link>
      <description>We present Atacama Cosmology Telescope (ACT) Data Release 6 (DR6) maps of the Cosmic Microwave Background temperature and polarization anisotropy at arcminute resolution over three frequency bands centered on 98, 150 and 220 GHz. The maps are based on data collected with the AdvancedACT camera over the period 2017–2022 and cover 19,000 square degrees with a median combined depth of 10 μK arcmin. We describe the instrument, mapmaking and map properties and illustrate them with a number of figures and tables. The ACT DR6 maps and derived products are available on LAMBDA at https://lambda.gsfc.nasa.gov/product/act/actadv_prod_table.html. We also provide an interactive web atlas at https://phy-act1.princeton.edu/public/snaess/actpol/dr6/atlas and HiPS data sets in Aladin (e.g. https://alasky.cds.unistra.fr/ACT/DR4DR6/color_CMB).</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/5cq952t2</guid>
      <pubDate>Tue, 5 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Naess, Sigurd</name>
      </author>
      <author>
        <name>Guan, Yilun</name>
      </author>
      <author>
        <name>Duivenvoorden, Adriaan J</name>
      </author>
      <author>
        <name>Hasselfield, Matthew</name>
      </author>
      <author>
        <name>Wang, Yuhan</name>
      </author>
      <author>
        <name>Abril-Cabezas, Irene</name>
      </author>
      <author>
        <name>Addison, Graeme E</name>
      </author>
      <author>
        <name>Ade, Peter AR</name>
      </author>
      <author>
        <name>Aiola, Simone</name>
      </author>
      <author>
        <name>Alford, Tommy</name>
      </author>
      <author>
        <name>Alonso, David</name>
      </author>
      <author>
        <name>Amiri, Mandana</name>
      </author>
      <author>
        <name>An, Rui</name>
      </author>
      <author>
        <name>Atkins, Zachary</name>
      </author>
      <author>
        <name>Austermann, Jason E</name>
      </author>
      <author>
        <name>Barbavara, Eleonora</name>
      </author>
      <author>
        <name>Battaglia, Nicholas</name>
      </author>
      <author>
        <name>Battistelli, Elia Stefano</name>
      </author>
      <author>
        <name>Beall, James A</name>
      </author>
      <author>
        <name>Bean, Rachel</name>
      </author>
      <author>
        <name>Beheshti, Ali</name>
      </author>
      <author>
        <name>Beringue, Benjamin</name>
      </author>
      <author>
        <name>Bhandarkar, Tanay</name>
      </author>
      <author>
        <name>Biermann, Emily</name>
      </author>
      <author>
        <name>Bolliet, Boris</name>
      </author>
      <author>
        <name>Bond, J Richard</name>
      </author>
      <author>
        <name>Calabrese, Erminia</name>
      </author>
      <author>
        <name>Capalbo, Valentina</name>
      </author>
      <author>
        <name>Carrero, Felipe</name>
      </author>
      <author>
        <name>Chen, Stephen</name>
      </author>
      <author>
        <name>Chesmore, Grace</name>
      </author>
      <author>
        <name>Cho, Hsiao-mei</name>
      </author>
      <author>
        <name>Choi, Steve K</name>
        <uri>https://orcid.org/0000-0002-9113-7058</uri>
      </author>
      <author>
        <name>Clark, Susan E</name>
      </author>
      <author>
        <name>Rosado, Rodrigo Cordova</name>
      </author>
      <author>
        <name>Cothard, Nicholas F</name>
      </author>
      <author>
        <name>Coughlin, Kevin</name>
      </author>
      <author>
        <name>Coulton, William</name>
      </author>
      <author>
        <name>Crichton, Devin</name>
      </author>
      <author>
        <name>Crowley, Kevin T</name>
      </author>
      <author>
        <name>Devlin, Mark J</name>
      </author>
      <author>
        <name>Dicker, Simon</name>
      </author>
      <author>
        <name>Duell, Cody J</name>
      </author>
      <author>
        <name>Duff, Shannon M</name>
      </author>
      <author>
        <name>Dunkley, Jo</name>
      </author>
      <author>
        <name>Dunner, Rolando</name>
      </author>
      <author>
        <name>Villagra, Carmen Embil</name>
      </author>
      <author>
        <name>Fankhanel, Max</name>
      </author>
      <author>
        <name>Farren, Gerrit S</name>
        <uri>https://orcid.org/0000-0001-5704-1127</uri>
      </author>
      <author>
        <name>Ferraro, Simone</name>
        <uri>https://orcid.org/0000-0003-4992-7854</uri>
      </author>
      <author>
        <name>Foster, Allen</name>
      </author>
      <author>
        <name>Freundt, Rodrigo</name>
      </author>
      <author>
        <name>Fuzia, Brittany</name>
      </author>
      <author>
        <name>Gallardo, Patricio A</name>
      </author>
      <author>
        <name>Garrido, Xavier</name>
      </author>
      <author>
        <name>Giardiello, Serena</name>
      </author>
      <author>
        <name>Gill, Ajay</name>
      </author>
      <author>
        <name>Givans, Jahmour</name>
      </author>
      <author>
        <name>Gluscevic, Vera</name>
      </author>
      <author>
        <name>Golec, Joseph E</name>
      </author>
      <author>
        <name>Gong, Yulin</name>
      </author>
      <author>
        <name>Halpern, Mark</name>
      </author>
      <author>
        <name>Harrison, Ian</name>
      </author>
      <author>
        <name>Healy, Erin</name>
      </author>
      <author>
        <name>Henderson, Shawn</name>
      </author>
      <author>
        <name>Hensley, Brandon</name>
      </author>
      <author>
        <name>Hervías-Caimapo, Carlos</name>
      </author>
      <author>
        <name>Hill, J Colin</name>
      </author>
      <author>
        <name>Hilton, Gene C</name>
      </author>
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        <name>Hilton, Matt</name>
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        <name>Hincks, Adam D</name>
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        <name>Hložek, Renée</name>
      </author>
      <author>
        <name>Ho, Shuay-Pwu Patty</name>
      </author>
      <author>
        <name>Hood, John</name>
      </author>
      <author>
        <name>Hornecker, Erika</name>
      </author>
      <author>
        <name>Huber, Zachary B</name>
      </author>
      <author>
        <name>Hubmayr, Johannes</name>
      </author>
      <author>
        <name>Huffenberger, Kevin M</name>
      </author>
      <author>
        <name>Hughes, John P</name>
      </author>
      <author>
        <name>Ikape, Margaret</name>
      </author>
      <author>
        <name>Irwin, Kent</name>
      </author>
      <author>
        <name>Isopi, Giovanni</name>
      </author>
      <author>
        <name>Jense, Hidde T</name>
      </author>
      <author>
        <name>Joshi, Neha</name>
      </author>
      <author>
        <name>Keller, Ben</name>
      </author>
      <author>
        <name>Kim, Joshua</name>
      </author>
      <author>
        <name>Knowles, Kenda</name>
      </author>
      <author>
        <name>Koopman, Brian J</name>
      </author>
      <author>
        <name>Kosowsky, Arthur</name>
      </author>
      <author>
        <name>Kramer, Darby</name>
      </author>
      <author>
        <name>Kusiak, Aleksandra</name>
      </author>
      <author>
        <name>La Posta, Adrien</name>
      </author>
      <author>
        <name>Laguë, Alex</name>
      </author>
      <author>
        <name>Lakey, Victoria</name>
      </author>
      <author>
        <name>Lee, Eunseong</name>
      </author>
      <author>
        <name>Li, Yaqiong</name>
      </author>
      <author>
        <name>Li, Zack</name>
      </author>
      <author>
        <name>Limon, Michele</name>
      </author>
      <author>
        <name>Lokken, Martine</name>
      </author>
      <author>
        <name>Louis, Thibaut</name>
      </author>
    </item>
    <item>
      <title>Unified and Consistent Structure Growth Measurements from Joint ACT, SPT, and Planck CMB Lensing</title>
      <link>https://escholarship.org/uc/item/3st1q56j</link>
      <description>We present the tightest cosmic microwave background (CMB) lensing constraints to date on the growth of structure by combining CMB lensing measurements from the Atacama Cosmology Telescope (ACT), the South Pole Telescope (SPT), and Planck. Each of these surveys individually provides lensing measurements with similarly high statistical power, achieving signal-to-noise ratios of approximately 40. The combined lensing band powers represent the most precise CMB lensing power spectrum measurement to date with a signal-to-noise ratio of 61 and an amplitude of A_{lens}^{recon}=1.025±0.017 with respect to the theory prediction from the best-fit CMB Planck-ACT cosmology. The band powers from all three lensing datasets, analyzed jointly, yield a 1.6% measurement of the parameter combination S_{8}^{CMBL}≡σ_{8}(Ω_{m}/0.3)^{0.25}=0.825_{-0.013}^{+0.015}. Including dark energy spectroscopic instrument baryon acoustic oscillation (BAO) data improves the constraint on the amplitude of matter fluctuations...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3st1q56j</guid>
      <pubDate>Tue, 5 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Qu, Frank J</name>
      </author>
      <author>
        <name>Ge, Fei</name>
      </author>
      <author>
        <name>Wu, WL Kimmy</name>
      </author>
      <author>
        <name>Abril-Cabezas, Irene</name>
      </author>
      <author>
        <name>Madhavacheril, Mathew S</name>
      </author>
      <author>
        <name>Millea, Marius</name>
      </author>
      <author>
        <name>Ahmed, Zeeshan</name>
      </author>
      <author>
        <name>Anderes, Ethan</name>
      </author>
      <author>
        <name>Anderson, Adam J</name>
      </author>
      <author>
        <name>Ansarinejad, Behzad</name>
      </author>
      <author>
        <name>Archipley, Melanie</name>
      </author>
      <author>
        <name>Atkins, Zachary</name>
      </author>
      <author>
        <name>Balkenhol, Lennart</name>
      </author>
      <author>
        <name>Battaglia, Nicholas</name>
      </author>
      <author>
        <name>Benabed, Karim</name>
      </author>
      <author>
        <name>Bender, Amy N</name>
      </author>
      <author>
        <name>Benson, Bradford A</name>
      </author>
      <author>
        <name>Bianchini, Federico</name>
      </author>
      <author>
        <name>Bleem, Lindsey E</name>
      </author>
      <author>
        <name>Bolliet, Boris</name>
      </author>
      <author>
        <name>Bond, J Richard</name>
      </author>
      <author>
        <name>Bouchet, François R</name>
      </author>
      <author>
        <name>Bryant, Lincoln</name>
      </author>
      <author>
        <name>Calabrese, Erminia</name>
      </author>
      <author>
        <name>Camphuis, Etienne</name>
      </author>
      <author>
        <name>Carlstrom, John E</name>
      </author>
      <author>
        <name>Carron, Julien</name>
      </author>
      <author>
        <name>Challinor, Anthony</name>
      </author>
      <author>
        <name>Chang, Clarence L</name>
      </author>
      <author>
        <name>Chaubal, Prakrut</name>
      </author>
      <author>
        <name>Chen, Geoff</name>
      </author>
      <author>
        <name>Chichura, Paul M</name>
      </author>
      <author>
        <name>Choi, Steve K</name>
        <uri>https://orcid.org/0000-0002-9113-7058</uri>
      </author>
      <author>
        <name>Chokshi, Aman</name>
      </author>
      <author>
        <name>Chou, Ti-Lin</name>
      </author>
      <author>
        <name>Coerver, Anna</name>
      </author>
      <author>
        <name>Coulton, William</name>
      </author>
      <author>
        <name>Crawford, Thomas M</name>
      </author>
      <author>
        <name>Daley, Cail</name>
      </author>
      <author>
        <name>Darwish, Omar</name>
      </author>
      <author>
        <name>de Haan, Tijmen</name>
      </author>
      <author>
        <name>Devlin, Mark J</name>
      </author>
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        <name>Dibert, Karia R</name>
      </author>
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        <name>Dobbs, Matthew A</name>
      </author>
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        <name>Doohan, Michael</name>
      </author>
      <author>
        <name>Doussot, Aristide</name>
      </author>
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        <name>Duivenvoorden, Adriaan J</name>
      </author>
      <author>
        <name>Dunkley, Jo</name>
      </author>
      <author>
        <name>Dunner, Rolando</name>
      </author>
      <author>
        <name>Dutcher, Daniel</name>
      </author>
      <author>
        <name>Villagra, Carmen Embil</name>
      </author>
      <author>
        <name>Everett, Wendy</name>
      </author>
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        <name>Farren, Gerrit S</name>
        <uri>https://orcid.org/0000-0001-5704-1127</uri>
      </author>
      <author>
        <name>Feng, Chang</name>
      </author>
      <author>
        <name>Ferraro, Simone</name>
      </author>
      <author>
        <name>Ferguson, Kyle R</name>
      </author>
      <author>
        <name>Fichman, Kyra</name>
      </author>
      <author>
        <name>Finson, Emily</name>
      </author>
      <author>
        <name>Foster, Allen</name>
      </author>
      <author>
        <name>Gallardo, Patricio A</name>
      </author>
      <author>
        <name>Galli, Silvia</name>
      </author>
      <author>
        <name>Gambrel, Anne E</name>
      </author>
      <author>
        <name>Gardner, Rob W</name>
      </author>
      <author>
        <name>Goeckner-Wald, Neil</name>
      </author>
      <author>
        <name>Gualtieri, Riccardo</name>
      </author>
      <author>
        <name>Guidi, Federica</name>
      </author>
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        <name>Guns, Sam</name>
      </author>
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        <name>Halpern, Mark</name>
      </author>
      <author>
        <name>Halverson, Nils W</name>
      </author>
      <author>
        <name>Hill, J Colin</name>
      </author>
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        <name>Hilton, Matt</name>
      </author>
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        <name>Hivon, Eric</name>
      </author>
      <author>
        <name>Holder, Gilbert P</name>
      </author>
      <author>
        <name>Holzapfel, William L</name>
        <uri>https://orcid.org/0000-0002-5744-6439</uri>
      </author>
      <author>
        <name>Hood, John C</name>
      </author>
      <author>
        <name>Howe, Doug</name>
      </author>
      <author>
        <name>Hryciuk, Alec</name>
      </author>
      <author>
        <name>Huang, Nicholas</name>
      </author>
      <author>
        <name>Hubmayr, Johannes</name>
      </author>
      <author>
        <name>Kéruzoré, Florian</name>
      </author>
      <author>
        <name>Khalife, Ali R</name>
      </author>
      <author>
        <name>Kim, Joshua</name>
      </author>
      <author>
        <name>Knox, Lloyd</name>
      </author>
      <author>
        <name>Korman, Milo</name>
      </author>
      <author>
        <name>Kornoelje, Kayla</name>
      </author>
      <author>
        <name>Kosowsky, Arthur</name>
      </author>
      <author>
        <name>Kuo, Chao-Lin</name>
      </author>
      <author>
        <name>Jense, Hidde T</name>
      </author>
      <author>
        <name>La Posta, Adrien</name>
      </author>
      <author>
        <name>Levy, Kevin</name>
      </author>
      <author>
        <name>Lowitz, Amy E</name>
      </author>
      <author>
        <name>Louis, Thibaut</name>
      </author>
      <author>
        <name>Lu, Chunyu</name>
      </author>
      <author>
        <name>Lynch, Gabriel P</name>
      </author>
      <author>
        <name>MacCrann, Niall</name>
      </author>
      <author>
        <name>Maniyar, Abhishek</name>
      </author>
      <author>
        <name>Martsen, Emily S</name>
      </author>
      <author>
        <name>McMahon, Jeff</name>
      </author>
      <author>
        <name>Menanteau, Felipe</name>
      </author>
      <author>
        <name>Montgomery, Joshua</name>
      </author>
    </item>
    <item>
      <title>Evidence for large baryonic feedback at low and intermediate redshifts from kinematic Sunyaev-Zel’dovich observations with ACT and DESI photometric galaxies</title>
      <link>https://escholarship.org/uc/item/113230xt</link>
      <description>Recent advances in cosmological observations have provided an unprecedented opportunity to investigate the distribution of baryons relative to the underlying matter. In this work, we show that the gas is more extended than the dark matter, and the amount of baryonic feedback at z≲1 disfavors low-feedback models such as that of state-of-the-art hydrodynamical simulation IllustrisTNG compared with high-feedback models such as that of the original Illustris simulation. This has important implications for bridging the gap between theory and observations and understanding galaxy formation and evolution. Furthermore, a better grasp of the baryon-dark matter link is critical to future cosmological analyses, which are currently impeded by our limited knowledge of baryonic feedback. Here, we measure the kinematic Sunyaev-Zel’dovich (kSZ) effect from the Atacama Cosmology Telescope, stacked on the luminous red galaxy sample of the Dark Energy Spectroscopic Instrument (DESI) imaging survey....</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/113230xt</guid>
      <pubDate>Tue, 5 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hadzhiyska, B</name>
      </author>
      <author>
        <name>Ferraro, S</name>
      </author>
      <author>
        <name>Guachalla, B Ried</name>
      </author>
      <author>
        <name>Schaan, E</name>
      </author>
      <author>
        <name>Aguilar, J</name>
      </author>
      <author>
        <name>Ahlen, S</name>
      </author>
      <author>
        <name>Battaglia, N</name>
      </author>
      <author>
        <name>Bond, JR</name>
      </author>
      <author>
        <name>Brooks, D</name>
      </author>
      <author>
        <name>Calabrese, E</name>
      </author>
      <author>
        <name>Choi, SK</name>
        <uri>https://orcid.org/0000-0002-9113-7058</uri>
      </author>
      <author>
        <name>Claybaugh, T</name>
      </author>
      <author>
        <name>Coulton, WR</name>
      </author>
      <author>
        <name>Dawson, K</name>
      </author>
      <author>
        <name>Devlin, M</name>
      </author>
      <author>
        <name>Dey, B</name>
      </author>
      <author>
        <name>Doel, P</name>
      </author>
      <author>
        <name>Duivenvoorden, AJ</name>
      </author>
      <author>
        <name>Dunkley, J</name>
      </author>
      <author>
        <name>Farren, GS</name>
        <uri>https://orcid.org/0000-0001-5704-1127</uri>
      </author>
      <author>
        <name>Font-Ribera, A</name>
      </author>
      <author>
        <name>Forero-Romero, JE</name>
      </author>
      <author>
        <name>Gallardo, PA</name>
      </author>
      <author>
        <name>Gaztañaga, E</name>
      </author>
      <author>
        <name>Gontcho, S Gontcho</name>
      </author>
      <author>
        <name>Gralla, M</name>
      </author>
      <author>
        <name>Le Guillou, L</name>
      </author>
      <author>
        <name>Gutierrez, G</name>
      </author>
      <author>
        <name>Guy, J</name>
        <uri>https://orcid.org/0000-0001-9822-6793</uri>
      </author>
      <author>
        <name>Hill, JC</name>
      </author>
      <author>
        <name>Hložek, R</name>
      </author>
      <author>
        <name>Honscheid, K</name>
      </author>
      <author>
        <name>Juneau, S</name>
      </author>
      <author>
        <name>Kehoe, R</name>
      </author>
      <author>
        <name>Kisner, T</name>
      </author>
      <author>
        <name>Kremin, A</name>
        <uri>https://orcid.org/0000-0003-0667-5941</uri>
      </author>
      <author>
        <name>Landriau, M</name>
      </author>
      <author>
        <name>Liu, RH</name>
      </author>
      <author>
        <name>Louis, T</name>
      </author>
      <author>
        <name>MacCrann, N</name>
      </author>
      <author>
        <name>de Macorra, A</name>
      </author>
      <author>
        <name>Madhavacheril, M</name>
      </author>
      <author>
        <name>Manera, M</name>
      </author>
      <author>
        <name>Meisner, A</name>
      </author>
      <author>
        <name>Miquel, R</name>
      </author>
      <author>
        <name>Moodley, K</name>
      </author>
      <author>
        <name>Moustakas, J</name>
      </author>
      <author>
        <name>Mroczkowski, T</name>
      </author>
      <author>
        <name>Naess, S</name>
      </author>
      <author>
        <name>Newman, J</name>
      </author>
      <author>
        <name>Niemack, MD</name>
      </author>
      <author>
        <name>Niz, G</name>
      </author>
      <author>
        <name>Page, L</name>
      </author>
      <author>
        <name>Palanque-Delabrouille, N</name>
      </author>
      <author>
        <name>Partridge, B</name>
      </author>
      <author>
        <name>Percival, WJ</name>
      </author>
      <author>
        <name>Prada, F</name>
      </author>
      <author>
        <name>Qu, FJ</name>
      </author>
      <author>
        <name>Rossi, G</name>
      </author>
      <author>
        <name>Sanchez, E</name>
      </author>
      <author>
        <name>Schlegel, D</name>
      </author>
      <author>
        <name>Schubnell, M</name>
      </author>
      <author>
        <name>Sherwin, B</name>
      </author>
      <author>
        <name>Sehgal, N</name>
      </author>
      <author>
        <name>Seo, H</name>
      </author>
      <author>
        <name>Sifón, C</name>
      </author>
      <author>
        <name>Spergel, D</name>
      </author>
      <author>
        <name>Sprayberry, D</name>
      </author>
      <author>
        <name>Staggs, S</name>
      </author>
      <author>
        <name>Tarlé, G</name>
      </author>
      <author>
        <name>Vargas, C</name>
      </author>
      <author>
        <name>Vavagiakis, EM</name>
      </author>
      <author>
        <name>Weaver, BA</name>
      </author>
      <author>
        <name>Wollack, EJ</name>
      </author>
      <author>
        <name>Zhou, R</name>
      </author>
      <author>
        <name>Zou, H</name>
      </author>
    </item>
    <item>
      <title>The Atacama Cosmology Telescope: DR6 constraints on extended cosmological models</title>
      <link>https://escholarship.org/uc/item/0xh0h3m1</link>
      <description>We use new cosmic microwave background (CMB) primary temperature and polarization anisotropy measurements from the Atacama Cosmology Telescope (ACT) Data Release 6 (DR6) to test foundational assumptions of the standard cosmological model, ΛCDM, and set constraints on extensions to it. We derive constraints from the ACT DR6 power spectra alone, as well as in combination with legacy data from the Planck mission. To break geometric degeneracies, we include ACT and Planck CMB lensing data and baryon acoustic oscillation data from DESI Year-1. To test the dependence of our results on non-ACT data, we also explore combinations replacing Planck with WMAP and DESI with BOSS, and further add supernovae measurements from Pantheon+ for models that affect the late-time expansion history. We verify the near-scale-invariance (running of the spectral index dns /d ln k = 0.0062 ± 0.0052) and adiabaticity of the primordial perturbations. Neutrino properties are consistent with Standard Model predictions:...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/0xh0h3m1</guid>
      <pubDate>Tue, 5 May 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Calabrese, Erminia</name>
      </author>
      <author>
        <name>Hill, J Colin</name>
      </author>
      <author>
        <name>Jense, Hidde T</name>
      </author>
      <author>
        <name>La Posta, Adrien</name>
      </author>
      <author>
        <name>Abril-Cabezas, Irene</name>
      </author>
      <author>
        <name>Addison, Graeme E</name>
      </author>
      <author>
        <name>Ade, Peter AR</name>
      </author>
      <author>
        <name>Aiola, Simone</name>
      </author>
      <author>
        <name>Alford, Tommy</name>
      </author>
      <author>
        <name>Alonso, David</name>
      </author>
      <author>
        <name>Amiri, Mandana</name>
      </author>
      <author>
        <name>An, Rui</name>
      </author>
      <author>
        <name>Atkins, Zachary</name>
      </author>
      <author>
        <name>Austermann, Jason E</name>
      </author>
      <author>
        <name>Barbavara, Eleonora</name>
      </author>
      <author>
        <name>Barbieri, Nicola</name>
      </author>
      <author>
        <name>Battaglia, Nicholas</name>
      </author>
      <author>
        <name>Battistelli, Elia Stefano</name>
      </author>
      <author>
        <name>Beall, James A</name>
      </author>
      <author>
        <name>Bean, Rachel</name>
      </author>
      <author>
        <name>Beheshti, Ali</name>
      </author>
      <author>
        <name>Beringue, Benjamin</name>
      </author>
      <author>
        <name>Bhandarkar, Tanay</name>
      </author>
      <author>
        <name>Biermann, Emily</name>
      </author>
      <author>
        <name>Bolliet, Boris</name>
      </author>
      <author>
        <name>Bond, J Richard</name>
      </author>
      <author>
        <name>Capalbo, Valentina</name>
      </author>
      <author>
        <name>Carrero, Felipe</name>
      </author>
      <author>
        <name>Chen, Shi-Fan</name>
      </author>
      <author>
        <name>Chesmore, Grace</name>
      </author>
      <author>
        <name>Cho, Hsiao-mei</name>
      </author>
      <author>
        <name>Choi, Steve K</name>
        <uri>https://orcid.org/0000-0002-9113-7058</uri>
      </author>
      <author>
        <name>Clark, Susan E</name>
      </author>
      <author>
        <name>Cothard, Nicholas F</name>
      </author>
      <author>
        <name>Coughlin, Kevin</name>
      </author>
      <author>
        <name>Coulton, William</name>
      </author>
      <author>
        <name>Crichton, Devin</name>
      </author>
      <author>
        <name>Crowley, Kevin T</name>
      </author>
      <author>
        <name>Darwish, Omar</name>
      </author>
      <author>
        <name>Devlin, Mark J</name>
      </author>
      <author>
        <name>Dicker, Simon</name>
      </author>
      <author>
        <name>Duell, Cody J</name>
      </author>
      <author>
        <name>Duff, Shannon M</name>
      </author>
      <author>
        <name>Duivenvoorden, Adriaan J</name>
      </author>
      <author>
        <name>Dunkley, Jo</name>
      </author>
      <author>
        <name>Dunner, Rolando</name>
      </author>
      <author>
        <name>Villagra, Carmen Embil</name>
      </author>
      <author>
        <name>Fankhanel, Max</name>
      </author>
      <author>
        <name>Farren, Gerrit S</name>
        <uri>https://orcid.org/0000-0001-5704-1127</uri>
      </author>
      <author>
        <name>Ferraro, Simone</name>
        <uri>https://orcid.org/0000-0003-4992-7854</uri>
      </author>
      <author>
        <name>Foster, Allen</name>
      </author>
      <author>
        <name>Freundt, Rodrigo</name>
      </author>
      <author>
        <name>Fuzia, Brittany</name>
      </author>
      <author>
        <name>Gallardo, Patricio A</name>
      </author>
      <author>
        <name>Garrido, Xavier</name>
      </author>
      <author>
        <name>Gerbino, Martina</name>
      </author>
      <author>
        <name>Giardiello, Serena</name>
      </author>
      <author>
        <name>Gill, Ajay</name>
      </author>
      <author>
        <name>Givans, Jahmour</name>
      </author>
      <author>
        <name>Gluscevic, Vera</name>
      </author>
      <author>
        <name>Goldstein, Samuel</name>
      </author>
      <author>
        <name>Golec, Joseph E</name>
      </author>
      <author>
        <name>Gong, Yulin</name>
      </author>
      <author>
        <name>Guan, Yilun</name>
      </author>
      <author>
        <name>Halpern, Mark</name>
      </author>
      <author>
        <name>Harrison, Ian</name>
      </author>
      <author>
        <name>Hasselfield, Matthew</name>
      </author>
      <author>
        <name>He, Adam</name>
      </author>
      <author>
        <name>Healy, Erin</name>
      </author>
      <author>
        <name>Henderson, Shawn</name>
      </author>
      <author>
        <name>Hensley, Brandon</name>
      </author>
      <author>
        <name>Hervías-Caimapo, Carlos</name>
      </author>
      <author>
        <name>Hilton, Gene C</name>
      </author>
      <author>
        <name>Hilton, Matt</name>
      </author>
      <author>
        <name>Hincks, Adam D</name>
      </author>
      <author>
        <name>Hložek, Renée</name>
      </author>
      <author>
        <name>Ho, Shuay-Pwu Patty</name>
      </author>
      <author>
        <name>Hood, John</name>
      </author>
      <author>
        <name>Hornecker, Erika</name>
      </author>
      <author>
        <name>Huber, Zachary B</name>
      </author>
      <author>
        <name>Hubmayr, Johannes</name>
      </author>
      <author>
        <name>Huffenberger, Kevin M</name>
      </author>
      <author>
        <name>Hughes, John P</name>
      </author>
      <author>
        <name>Ikape, Margaret</name>
      </author>
      <author>
        <name>Irwin, Kent</name>
      </author>
      <author>
        <name>Isopi, Giovanni</name>
      </author>
      <author>
        <name>Joshi, Neha</name>
      </author>
      <author>
        <name>Keller, Ben</name>
      </author>
      <author>
        <name>Kim, Joshua</name>
      </author>
      <author>
        <name>Knowles, Kenda</name>
      </author>
      <author>
        <name>Koopman, Brian J</name>
      </author>
      <author>
        <name>Kosowsky, Arthur</name>
      </author>
      <author>
        <name>Kramer, Darby</name>
      </author>
      <author>
        <name>Kusiak, Aleksandra</name>
      </author>
      <author>
        <name>Laguë, Alex</name>
      </author>
      <author>
        <name>Lakey, Victoria</name>
      </author>
      <author>
        <name>Lattanzi, Massimiliano</name>
      </author>
      <author>
        <name>Lee, Eunseong</name>
      </author>
      <author>
        <name>Li, Yaqiong</name>
      </author>
      <author>
        <name>Li, Zack</name>
      </author>
    </item>
    <item>
      <title>Flow and Form as Modulation: Henri Pousseur's 8 Études Paraboliques and the Transformation of Electronic Music</title>
      <link>https://escholarship.org/uc/item/56h4g7q6</link>
      <description>This paper examines 8 Études Paraboliques (1972/73) by Henri Pousseur as the articulation of a different electronic modernity, grounded in continuous modulation rather than discrete sound objects or serial parameter control. Situating the work within—and beyond—the traditional Paris–Cologne dichotomy of postwar electroacoustic music, the study argues that the Études propose an alternative ontology of sound in which form emerges as a dynamic trajectory within a relational, oscillatory field. Drawing on historical documentation from the WDR Studio in Cologne, the paper reconstructs the technical and institutional conditions that enabled this approach, emphasizing the role of voltage-controlled synthesis, empirical listening practices, and the deliberate absence of a score. The cycle is further interpreted as a cybernetic system, characterized by feedback, nonlinear behavior, and emergent form, in which compositional agency is distributed across interacting processes. Building...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/56h4g7q6</guid>
      <pubDate>Thu, 30 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chagas, Paulo C.</name>
      </author>
      <author>
        <name>Petković Lozo, Ivana</name>
      </author>
    </item>
    <item>
      <title>From Cybernetics to Immersivity: Reframing Sound Space in Electroacoustic and Audiovisual Composition</title>
      <link>https://escholarship.org/uc/item/2731723g</link>
      <description>This article examines the evolution of sound space in elec- troacoustic music from a theoretical and compositional perspective, with a focus on key works by Paulo C. Chagas. It transitions from early paradigms of musique concrète and elektronische Musik to immersive and telematic environments, articulating sound space as a relational, cognitive-affective field shaped by technologies, listening practices, and socio-political conditions. Drawing on theories of acoustemology, cyber- netics, affect, and embodied cognition, the discussion encompasses the cybernetic spatial models of Migration and Projektion, the immersive ambisonic environment of Pune Metamorphosis, and the telematic field-work of Sound Imaginations. Electroacoustic sound space is not confined to technical or aesthetic dimensions; it constitutes a cognitive-affective and socio-political field in which composition unfolds as a mode of know- ing, a practice of critique, and a poetics of presence.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2731723g</guid>
      <pubDate>Thu, 30 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chagas, Paulo C.</name>
      </author>
      <author>
        <name>Petković Lozo, Ivana</name>
      </author>
    </item>
    <item>
      <title>A roadmap for equitable reuse of public microbiome data</title>
      <link>https://escholarship.org/uc/item/1wh3c8n2</link>
      <description>Science benefits from rapid open data sharing, but current guidelines for data reuse were established two decades ago, when databases were several million times smaller than they are today. These guidelines are largely unfamiliar to the scientific community, and, owing to the rapid increase in biological data generated in the past decade, they are also outdated. As a result, there is a lack of community standards suited to the current landscape and inconsistent implementation of data sharing policies across institutions. Here we discuss current sequence data sharing policies and their benefits and drawbacks, and present a roadmap to establish guidelines for equitable sequence data reuse, developed in consultation with a data consortium of 167 microbiome scientists. We propose the use of a Data Reuse Information (DRI) tag for public sequence data, which will be associated with at least one Open Researcher and Contributor ID (ORCID) account. The machine-readable DRI tag indicates...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/1wh3c8n2</guid>
      <pubDate>Mon, 27 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hug, Laura A</name>
      </author>
      <author>
        <name>Hatzenpichler, Roland</name>
      </author>
      <author>
        <name>Moraru, Cristina</name>
      </author>
      <author>
        <name>Soares, André R</name>
      </author>
      <author>
        <name>Meyer, Folker</name>
      </author>
      <author>
        <name>Heyder, Anke</name>
      </author>
      <author>
        <name>Probst, Alexander J</name>
      </author>
    </item>
    <item>
      <title>The Role of Mindfulness in Daily Experiences of Patience and Impatience</title>
      <link>https://escholarship.org/uc/item/5p33b3sp</link>
      <description>ObjectivesSuccess in life often requires patience. However, little is known about patience as a psychological process outside of research on temporal discounting, and even less is known about the experience of impatience. Across three studies, we tested the role of mindfulness in daily experiences of patience and impatience.MethodParticipants (total n = 600) recalled daily experiences of impatience each day for 5&amp;nbsp;days. Studies 2 and 3 introduced mindfulness interventions compared to either a control (Study 2) or mind-wandering (Study 3) condition.ResultsAcross studies, multilevel models revealed robust associations between daily mindfulness, reduced impatience, and bolstered patience. In Study 3, participants in the mindfulness condition perceived frustrating delays as less objectionable, felt more motivated and able to respond with patience during these days, and ultimately responded more patiently.ConclusionsFindings suggest that mindfulness promotes patience during everyday...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/5p33b3sp</guid>
      <pubDate>Fri, 24 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Hawes, Jason</name>
      </author>
      <author>
        <name>Sweeny, Kate</name>
      </author>
    </item>
    <item>
      <title>TEACHING AND ADVANCING SUBSTANCE USE CARE FOR ADOLESCENTS AND YOUNG ADULTS</title>
      <link>https://escholarship.org/uc/item/8xv770ch</link>
      <description>TEACHING AND ADVANCING SUBSTANCE USE CARE FOR ADOLESCENTS AND YOUNG ADULTS</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/8xv770ch</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Fortuna, Lisa R</name>
        <uri>https://orcid.org/0000-0002-5336-4970</uri>
      </author>
      <author>
        <name>Tyrrell, Rosemary</name>
      </author>
      <author>
        <name>Porche, Michelle V</name>
      </author>
    </item>
    <item>
      <title>Inferring fungal cis-regulatory networks from genome sequences via unsupervised and interpretable representation learning</title>
      <link>https://escholarship.org/uc/item/71p7w8n8</link>
      <description>Gene expression patterns are determined to a large extent by transcription factor (TF) binding to noncoding regulatory regions in the genome. However, gene expression cannot yet be systematically predicted from genome sequences, in part because nonfunctional matches to the sequence patterns (motifs) recognized by TFs occur frequently throughout the genome. Large-scale functional genomics data for many TFs has enabled characterization of regulatory networks in experimentally accessible cells such as budding yeast. Beyond yeast, fungi are important industrial organisms and pathogens, but large-scale functional data is only sporadically available. Uncharacterized regulatory networks control key pathways and gene expression programs associated with fungal phenotypes. Here, we explore a sequence-only approach to inferring regulatory networks by leveraging the 100s of genomes now available for many clades of fungi. We use gene orthology as the learning signal to infer interpretable,...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/71p7w8n8</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Moses, Alan M</name>
      </author>
      <author>
        <name>Stajich, Jason E</name>
        <uri>https://orcid.org/0000-0002-7591-0020</uri>
      </author>
      <author>
        <name>Gasch, Audrey P</name>
      </author>
      <author>
        <name>Knowles, David A</name>
      </author>
    </item>
    <item>
      <title>Entomopathogenic Nematode Steinernema carpocapsae Venom Proteins Disrupt Developmental Physiology and Reproduction of Spodoptera frugiperda (Lepidoptera: Noctuidae)</title>
      <link>https://escholarship.org/uc/item/45p2n02w</link>
      <description>Entomopathogenic Nematode Steinernema carpocapsae Venom Proteins Disrupt Developmental Physiology and Reproduction of Spodoptera frugiperda (Lepidoptera: Noctuidae)</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/45p2n02w</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Mishra, Manisha</name>
      </author>
      <author>
        <name>Farias, Leonor Georgette</name>
      </author>
      <author>
        <name>Song, Steven</name>
      </author>
      <author>
        <name>Nguyen, Steven</name>
      </author>
      <author>
        <name>Shah, Purav</name>
      </author>
      <author>
        <name>Dillman, Adler R</name>
      </author>
    </item>
    <item>
      <title>University of California, Riverside School of Medicine.</title>
      <link>https://escholarship.org/uc/item/4439s9qv</link>
      <description>University of California, Riverside School of Medicine.</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/4439s9qv</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Willis, Brigham C</name>
      </author>
      <author>
        <name>Lytle, Christian</name>
      </author>
      <author>
        <name>Dupper, Maegen</name>
      </author>
      <author>
        <name>Tyrrell, Rosemary</name>
      </author>
      <author>
        <name>Morrison, Elizabeth H</name>
      </author>
      <author>
        <name>Davis, Kendrick</name>
      </author>
      <author>
        <name>Barton, Kathy</name>
      </author>
      <author>
        <name>Deas, Deborah</name>
      </author>
    </item>
    <item>
      <title>The hidden taxonomic novelty of anamorphic basidiomycetous yeasts in the phyllosphere and tidal flats in China</title>
      <link>https://escholarship.org/uc/item/3rg68828</link>
      <description>Basidiomycetous yeasts are taxonomically and ecologically diverse. While the phyllosphere of plants in China has been the subject of extensive research on yeast biodiversity, many unique and remote habitats remain significantly underexplored for their yeast species. The objective of this study was to investigate the hidden taxonomic novelty of basidiomycetous yeasts in these distinctive niches to comprehensively refine the current phylogenetic understanding. During intensive investigations, 164 yeast strains were identified from various samples collected from the phyllosphere and tidal flats in China. These isolates underwent detailed multi-gene phylogenetic analyses combined with phenotypic characterization for taxonomic placement. The analyses revealed a remarkable level of hidden diversity. These 164 isolates represent one new order (Sterigmoblongales), two new families (Sterigmoblongaceae and Turchettiaceae), five new genera (Nakasea, Sterigmoblongus, Buzzinia, Gracilitas,...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/3rg68828</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Sun, JQ</name>
      </author>
      <author>
        <name>Du, ZN</name>
      </author>
      <author>
        <name>Zhu, HY</name>
      </author>
      <author>
        <name>Luo, JZ</name>
      </author>
      <author>
        <name>Zheng, AK</name>
      </author>
      <author>
        <name>Boekhout, T</name>
      </author>
      <author>
        <name>Groenewald, M</name>
      </author>
      <author>
        <name>Hui, FL</name>
      </author>
      <author>
        <name>Li, AH</name>
      </author>
      <author>
        <name>Stajich, JE</name>
        <uri>https://orcid.org/0000-0002-7591-0020</uri>
      </author>
      <author>
        <name>Zang, W</name>
      </author>
      <author>
        <name>Bai, FY</name>
      </author>
      <author>
        <name>Liu, XZ</name>
      </author>
    </item>
    <item>
      <title>Effects of environmental setting and diet on the gut microbial ecology of eastern hellbenders (Cryptobranchus alleganiensis alleganiensis)</title>
      <link>https://escholarship.org/uc/item/38w905dc</link>
      <description>ABSTRACT  Background  Eastern hellbenders ( Cryptobranchus alleganiensis alleganiensis ) have undergone substantial population declines throughout their range, leading them to become the focus of increased conservation efforts, including care in zoo and university settings. However, effective implementation of such conservation strategies often relies on a comprehensive understanding of host health, which can be directly influenced by the gut microbiome, yet characterization of gut microbiota often remains overlooked in ex situ conservation facilities. Additionally, effects on the gut microbiome associated with releasing zoo-reared animals into the wild are poorly understood. Therefore, these circumstances make hellbenders an ideal species to examine the relationship between zoo management strategies and gut microbial dynamics.    Methods 16S rRNA sequencing was used to investigate dissimilarities between the gut microbiome of hellbenders in zoo and wild settings and to evaluate...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/38w905dc</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Cummins, Chloe</name>
      </author>
      <author>
        <name>Sutton, William</name>
      </author>
      <author>
        <name>McLeod, Taina</name>
      </author>
      <author>
        <name>Dallas, Jason W</name>
      </author>
      <author>
        <name>Ghotbi, Mitra</name>
      </author>
      <author>
        <name>Vargas-Gastélum, Lluvia</name>
      </author>
      <author>
        <name>Alexander, N Reed</name>
      </author>
      <author>
        <name>Rurik, Alexander J</name>
      </author>
      <author>
        <name>McGinnity, Dale</name>
      </author>
      <author>
        <name>Reinsch, Sherri Doro</name>
      </author>
      <author>
        <name>Sandonato, Pia</name>
      </author>
      <author>
        <name>Arbour, Jessica</name>
      </author>
      <author>
        <name>Freake, Michael</name>
      </author>
      <author>
        <name>Ashley, Anthony</name>
      </author>
      <author>
        <name>Ternes, William</name>
      </author>
      <author>
        <name>Culp, Elizabeth</name>
      </author>
      <author>
        <name>Spatafora, Joseph</name>
      </author>
      <author>
        <name>McPhail, Kerry</name>
      </author>
      <author>
        <name>Stajich, Jason E</name>
        <uri>https://orcid.org/0000-0002-7591-0020</uri>
      </author>
      <author>
        <name>Hardman, Rebecca</name>
      </author>
      <author>
        <name>Walker, Donald M</name>
      </author>
    </item>
    <item>
      <title>Phyling: phylogenetic inference from annotated genomes</title>
      <link>https://escholarship.org/uc/item/2q20z718</link>
      <description>Phyling is a fast, scalable, and user-friendly tool supporting phylogenomic reconstruction of species phylogenies directly from protein-encoded genomic data. It identifies orthologous genes by searching protein sequences against a curated set of Hidden Markov Models profiles, consisting of single-copy orthologs derived from the BUSCO database. To optimize the speed of the final inference, Phyling includes a module to filter aligned orthologs based on their phylogenetic informativeness. Finally, Phyling provides a companion wrapper for automated species tree construction using either consensus or concatenation strategies. Phyling efficiently resolves large phylogenies by optimizing memory usage and data processing. Its checkpoint system enables users to incrementally add or remove samples without repeating the entire search process. For analyses involving closely related taxa, Phyling supports the use of nucleotide coding sequences, which may capture phylogenetic signals missed...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2q20z718</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Tsai, Cheng-Hung</name>
      </author>
      <author>
        <name>Stajich, Jason E</name>
        <uri>https://orcid.org/0000-0002-7591-0020</uri>
      </author>
    </item>
    <item>
      <title>Characterization and ligand binding properties of a fatty acid- and retinol- binding protein (Hp-FAR-2) from Heligmosomoides polygyrus</title>
      <link>https://escholarship.org/uc/item/2hn85297</link>
      <description>Characterization and ligand binding properties of a fatty acid- and retinol- binding protein (Hp-FAR-2) from Heligmosomoides polygyrus</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/2hn85297</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Azizpor, Pakeeza</name>
      </author>
      <author>
        <name>Montoya, Janice</name>
      </author>
      <author>
        <name>Eyabi, Fayez</name>
      </author>
      <author>
        <name>Ramirez, Jose</name>
      </author>
      <author>
        <name>Hill, Tara</name>
      </author>
      <author>
        <name>Pena, Robert</name>
      </author>
      <author>
        <name>Mishra, Manisha</name>
      </author>
      <author>
        <name>Boulanger, Martin J</name>
      </author>
      <author>
        <name>Dillman, Adler R</name>
      </author>
      <author>
        <name>Ratnappan, Ramesh</name>
      </author>
    </item>
    <item>
      <title>Genomic and Ecological Flexibility Shape the Global Distribution of a Black Fungus</title>
      <link>https://escholarship.org/uc/item/1v48j0gb</link>
      <description>Black fungi are among the most stress-resistant organisms known, yet the genetic and ecological foundations of their extraordinary resilience remain poorly understood. This study explores the adaptation strategies of the melanised fungus Elasticomyces elasticus by integrating genomic and ecological data. To uncover the mechanisms of adaptation, we combined whole-genome sequencing, functional annotation, environmental metadata, and large-scale soil metabarcoding analyses. Phylogenomic approaches were employed to delineate evolutionary lineages and assess ploidy levels. The results revealed that the global distribution of Elasticomyces phylotypes is primarily influenced by temperature, UV radiation, and soil organic carbon, suggesting that different phylotypes have evolved heterogeneous strategies for stress resistance. Comparative genomic analyses identified a set of 'sentinel pathways,' notably glutathione metabolism and nucleotide biosynthesis, which were enriched in strains...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/1v48j0gb</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Coleine, Claudia</name>
      </author>
      <author>
        <name>Biagioli, Federico</name>
      </author>
      <author>
        <name>Sáez‐Sandino, Tadeo</name>
      </author>
      <author>
        <name>Gostincar, Cene</name>
      </author>
      <author>
        <name>Turco, Silvia</name>
      </author>
      <author>
        <name>Muggia, Lucia</name>
      </author>
      <author>
        <name>Donati, Claudio</name>
      </author>
      <author>
        <name>Cestaro, Alessandro</name>
      </author>
      <author>
        <name>Kurbessoian, Tania</name>
      </author>
      <author>
        <name>Egidi, Eleonora</name>
      </author>
      <author>
        <name>Stajich, Jason E</name>
        <uri>https://orcid.org/0000-0002-7591-0020</uri>
      </author>
      <author>
        <name>Tedersoo, Leho</name>
      </author>
      <author>
        <name>Delgado‐Baquerizo, Manuel</name>
      </author>
    </item>
    <item>
      <title>Private members’ bills &amp;amp; parliamentary motions: Who bothers?</title>
      <link>https://escholarship.org/uc/item/1kn5c2xd</link>
      <description>While the role of legislators in parliamentary systems may sometimes seem to involve little more than to support the government of the day, legislators in many parliaments regularly take advantage of their, often limited, opportunities to introduce members’ bills and parliamentary motions. The success of these efforts is typically limited, which raises the question of why legislators bother. We argue that the legislators’ behavior is in part driven by the incentives their parties present them with. Government and opposition MPs behave in a different manner because government and opposition parties value legislative activity and types of legislative activity differently. Government MPs are expected to stay out of the way of the government’s agenda or focus their attention on less salient issues. In contrast, opposition MPs are expected to do the opposite and to present their parties as viable government alternatives. Examining members’ bills and parliamentary motions in Iceland...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/1kn5c2xd</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Oh, Eunseong</name>
      </author>
      <author>
        <name>Indridason, Indridi H</name>
      </author>
    </item>
    <item>
      <title>Examining relationships among regional economic conditions, cognitive control, and intergroup bias in the implicit association test: A regional modeling approach</title>
      <link>https://escholarship.org/uc/item/11m4g7kx</link>
      <description>Individuals experiencing economic stress demonstrate lower cognitive control and higher intergroup bias. The present research extends beyond individuals to investigate relationships among regional economic conditions, regional cognitive control, and intergroup bias. We aggregated 2.9 million US-based participants’ geolocated responses on the Black/White Implicit Association Test, then applied the Process Dissociation Procedure to estimate state-level cognitive control and racial evaluations across the years 2005 to 2019. Black populations’ cognitive control was weaker in states where Black residents faced more adverse economic conditions, but stronger in states where White residents faced more adverse economic conditions. White populations’ cognitive control was weaker in states where more Black residents faced unemployment. Black populations’ outgroup biases were more negative in states where more White residents lived in poverty, and White populations’ ingroup biases were more...</description>
      <guid isPermaLink="true">https://escholarship.org/uc/item/11m4g7kx</guid>
      <pubDate>Thu, 23 Apr 2026 00:00:00 +0000</pubDate>
      <author>
        <name>Chaplin, Kayla</name>
      </author>
      <author>
        <name>Wilson, Liz</name>
      </author>
      <author>
        <name>Laukenmann, Ruben</name>
      </author>
      <author>
        <name>Calanchini, Jimmy</name>
      </author>
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